Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02503 ATGGATTCGCAACAGAACAATTTGTTTGAAACCGCATCTCAGCCCGACACGGGTAACGATGCTTACACATTTCTTGAGTTCAACACACAGGGGGAAGACTTCGATTACCCTGAATTTCGCGACCCTATTAGGTCCCCTGTAGCGTGGCCGACTCCTTCTGATTCCTTAGCGGATCATACGGACCGTGGTGGCGGGTCCGATCACCAGTCTGATGCGTCTCCGGTTTCCGCTGCACCTGGAAGTGCCACGAAAGGACGGAGTGGAGGAGGTTCGGGGAATACTGGCGGTAATAATCAAATGGTTGATGCATTGGCAGCCGGGATGAGTGGGTTGACGTTTGAGGATACTGGGGATGATGATAATTATGAGTTTGGGAAGGGGAATTTCACGGAGCATGCTTGTAGGTATTGTGGGGTGTCGAACCCGGCTTGTGTTGTGAGGTGTAATGTACCCTCGTGTCGTAAGTGGTTCTGCAATTCGCGAGGGAACACGTCTGGGTCGCATATTGTGAATCATCTGGTCCGGGCAAAGCATAAGGAAGTTTGTCTTCACAAAGACAGTCCACTGGGAGAAACAATTCTGGAGTGTTACAATTGTGGCTGCCGAAATGTATTCCTCCTTGGATTTATTTCTGCAAAGACGGAAAGTGTGGTTGTTCTACTCTGTAGGGAACCTTGCTTAAGTGTAAATGCTCTCAAGGATATGAATTGGGACTTGAGTCAGTGGTGCCCTCTCATTGATGATAGGTGCTTCTTGCAGTGGCTGGTTAAGATTCCTTCTGAGCAAGAGCAGTTGAGGGCACGGCAAATTAGTGCACAACAAATAAATAAAATTGAGGAACTTTGGAAGACAAACCCAGATGCATCCCTTGAAGATCTTGAAAAACCTGGTGTGGATGATGAACCACAGCCTGTAGCATTGAAATATGAAGATGCTTATCAGTATCAAAATGTATTTGCACCTCTTATCAAGCTTGAAGCTGACTACGATAAAATGATGAAAGAATCTCAGAGCAAGGATAATGTCACTGTACGTTGGGACATTGGCCTTAACAAGAAGAGGATAGCTTATTTTGTCTTTCCAAAGGAGGACAATGAATTGCGTCTTGTACCTGGAGATGAGTTGAGGTTGCGTTATTCTGGTGATGCAGCTCATCCAGCTTGGCATTCTGTTGGTCATGTGATCAAGCTGACTGCACAGGAAGAGGTTGCACTTGAGCTTCGTGCAAGCCAGGGGGTCCCAGTTGATGTGGTCCATGGTTTTAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTTGACCGAATGCAGGGAGCTATGAAGACATTTGCTGTTGACGAGACCAGTGTTAGTGGTTATATCTACCATCACTTATTAGGACATGAAGTGGAGGTCCAGATGGTCCGCAATACGCTTCCTCGTCGTTTTGGTGCTCCTGGCCTCCCAGAGCTCAATGCATCTCAAGTATTTGCTGTCAAAAGTGTTCTTCAGAAGCCAATAAGCTTGATTCAGGGACCTCCGGGCACTGGAAAAACTGTAACTTCTGCTGCCATTGTGTATCATATGGCCAAACAAGGCCAAGGGCAGGTACTGGTCTGTGCCCCTAGTAATGTGGCTGTGGACCAGCTGGCAGAGAAGATAAGTGCAACTGGATTGAAGGTTGTTAGGCTATGTGCAAAATCAAGGGAAGCTGTAAGTTCTCCTGTGGAACACTTAACCCTTCATTATCAGGTTCGGCATCTTGACACATCGGAAAGAAGTGAACTTCATAAGTTGCAACAATTGAAAGATGAGCAAGGGGAGTTGTCTAGCAGTGATGAGAAAAAATATAAGGCCCTTAAGAGAGCAACAGAGAGGGAAATTTCACAGAGTGCAGATGTTATTTGCTGCACATGTGTTGGTGCGGGAGACCCACGCTTGTCAAATTTTAGATTTCGTCAGGTTCTTATTGACGAGTCTACTCAGGCCACAGAACCTGAATGTCTCATTCCTCTTGTTCTTGGAGCAAAGCAGGCACGTGGAGCTGTTCTTGTTGGTGACCATTGCCAACTGGGACCTGTCATTATGTGTAAAAAAGCGGCACGTGCAGGGCTGGCTCAGTCGCTCTTTGAACGTCTTGTCCTTCTTGGTGTGAAGCCAATTAGATTGCAGGTCCAATATCGAATGCACCCATCGCTTTCTGAATTTCCTTCTAACAGCTTCTATGAGGGCACACTACAAAATGGAGTTACCATCAACGAAAGGCAATCAACAGGCATCGACTTCCCATGGCCTGTTCCCAACCGTCCAATGTTCTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACTTCCTACCTAAATAGGACTGAGGCAGCAAATATTGGAGTTATCACACCGTATGAGGGGCAAAGAGCTTACATCGTTAACTATATGTCAAGAAATGGTGCTCTCAGACAGCAACTTTACAAAGAAATAGAGGTTGCAAGCGTGGATTCATTTCAAGGAAGGGAAAAAGATTATATTATATTGTCATGTGTGAGGAGCAATGAACATCAGGGCATTGGATTTCTTAATGATCCTCGCAGGCTCAATGTGGCTTTAACACGAGCTCGATATGGTATCGTCATACTAGGAAACCCAAAGGTTTTGAGCAAACAACCACTGTGGAATAGCTTATTGACGCATTACAAGGAACATGAGTGCTTGGTTGAGGGCCCCTTGAATAACTTGAAACAAAGCATGATTCAATTTCAGAAGCCTAAAAAGATATACAATGATCGACGTCTTTTCTTTGCTGGTGGGCCTGGAGTTGTGCCAAATGATAATTTTGGACCTGTTGCCCCATCCGGCCCTAATGCTGATAGAAGAAGTAGTCGTGGTAGAGGTTCATACTTTCCTCCTCACCTGCCGAATGGCGCCCAAAAGCCTGGTGTGCATGCATCTGGTTATCCCATGCCTCGAGTTCCCCTCCCCTCATTTCACGGCGGTCCCCCACAGCCATACGCAATTCCAACTCGTGGAGCTGTACATGGACCAGTTGGTGCTGTTCCTCATGTTCCTCAACCAGGAAGTAGGGGTTTCGGGGCAGGGCGGGGAAATGCAGGTGCTCCTATTGGGAGTCAGCTTCCAAATCAGCAAGGCTCTCAACAAAATATTGGAAATCTCGGTTCCACTTTTAACTTTCCTGGTTTGGAGAGTCCCAATAGCCAACCATCAGTGGGTGGTCCGTTGTCCCAACTTGGGTTTGTTAACAACATGCCTGTTCAGCCACCTACTCAAACATTCCGCGATGGGTACTCCATGGGGGGAATTTCCCAGGACTTCTTGGGCGATGACTTTAAAAGCCAGGGATCGCATGTTCCTTATAATGTCACTGATTTCTCCACTCAGGCATCTCAAACTGGTTATCCCATTGACTACGTTGGTCAAGGAGGGCAGGGTGGCTTTCCAGGGAGCTTCCTGAACCAGAATTCTCAATCTGGATATTCCCGTTTTGGAGCAGGAAATGATTTCATGTCACAGGATTACATGAACCATGGTTCACAAGGTTTATTTACTCAAGTTGGTTTCAGCGATCCCTCACTAGATGAAGCATCCCAAAGTCACTACAATGTGACCAATGCAAACCCACTACAGTCTCAGCAGGGCATGATGAATTCTCTCTACTCCCAGCCCTTTGCACATTACAATACACAGCCCTCAACCCTGCAGGCCCCATCACAGCAGCAGCCTCAGCAGGGACAGAGCTCCCAAAATCAGAAAATTCACTTTAGTGGTTGA 3768 46.63 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHTDRGGGSDHQSDASPVSAAPGSATKGRSGGGSGNTGGNNQMVDALAAGMSGLTFEDTGDDDNYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQARGAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSGPNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPQPYAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSQLPNQQGSQQNIGNLGSTFNFPGLESPNSQPSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQASQTGYPIDYVGQGGQGGFPGSFLNQNSQSGYSRFGAGNDFMSQDYMNHGSQGLFTQVGFSDPSLDEASQSHYNVTNANPLQSQQGMMNSLYSQPFAHYNTQPSTLQAPSQQQPQQGQSSQNQKIHFSG 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32012495 32022344 + MELO3C013879.2.1 Cme06g02503 331652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02503 1255 CDD DEXXQc_UPF1 482 720 - -
Cme06g02503 1255 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Cme06g02503 1255 Gene3D - 720 914 IPR027417 -
Cme06g02503 1255 Gene3D - 446 719 IPR027417 -
Cme06g02503 1255 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Cme06g02503 1255 MobiDBLite consensus disorder prediction 937 980 - -
Cme06g02503 1255 CDD 1B_UPF1-like 338 425 IPR040812 -
Cme06g02503 1255 Pfam AAA domain 698 876 IPR041679 -
Cme06g02503 1255 PANTHER DNA2/NAM7 HELICASE FAMILY 108 1022 IPR045055 -
Cme06g02503 1255 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 108 1022 - -
Cme06g02503 1255 Pfam Type III restriction enzyme, res subunit 486 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cme06g02503 1255 MobiDBLite consensus disorder prediction 1020 1071 - -
Cme06g02503 1255 Gene3D - 338 426 - -
Cme06g02503 1255 Pfam AAA domain 583 688 IPR041677 GO:0004386
Cme06g02503 1255 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Cme06g02503 1255 MobiDBLite consensus disorder prediction 1221 1255 - -
Cme06g02503 1255 MobiDBLite consensus disorder prediction 1 100 - -
Cme06g02503 1255 MobiDBLite consensus disorder prediction 1 26 - -
Cme06g02503 1255 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Cme06g02503 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 898 IPR027417 -
Cme06g02503 1255 Gene3D - 568 620 - -
Cme06g02503 1255 CDD SF1_C_Upf1 721 893 IPR041679 -
Cme06g02503 1255 MobiDBLite consensus disorder prediction 86 100 - -
Cme06g02503 1255 MobiDBLite consensus disorder prediction 1034 1071 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02503 K14326 UPF1, RENT1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] - csv:101214107 2457.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00755 Cme-Chr1:7610216 Cme06g02503 Cme-Chr6:32012495 1.69E-06 transposed
Cme01g01579 Cme-Chr1:20920967 Cme06g02503 Cme-Chr6:32012495 7.07E-41 transposed
Cme01g02728 Cme-Chr1:34477139 Cme06g02503 Cme-Chr6:32012495 1.16E-33 transposed
Cme04g02198 Cme-Chr4:29209042 Cme06g02503 Cme-Chr6:32012495 2.27E-53 transposed
Cme09g01467 Cme-Chr9:19874157 Cme06g02503 Cme-Chr6:32012495 4.51E-56 transposed
Cme10g00050 Cme-Chr10:384377 Cme06g02503 Cme-Chr6:32012495 9.55E-27 transposed
Cme10g01138 Cme-Chr10:10727227 Cme06g02503 Cme-Chr6:32012495 7.29E-08 transposed
Cme10g01358 Cme-Chr10:15685890 Cme06g02503 Cme-Chr6:32012495 2.49E-33 transposed
Cme06g00321 Cme-Chr6:1970340 Cme06g02503 Cme-Chr6:32012495 1.57E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40