Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02513 ATGAAGTGTTTCTTTTATCCTAAGGGAAAATCAAAGTCCAAAGGAATATCAAAATCTGCTCCAGAGTTAAACCAAGATGAAAAATCCAACAAATCAGCCAAGGCAAATGGTTTCAGACCATCAAATTCATTACCTTCAAGGAGTATTCCTGAATTGTACAAAGAGAAGGAGCAAAATTTGAGGGCTTTCTCTCTCCAAGAGCTTGTTGATGCAACAAATGGCTTTAGCAGGATGTTGAAGATTGGGGAGGGTGGTTTTGGGTCTGTGTATAAAGGAAGACTTAAACCCATAACTCCCAATGGTGAACCTGTTGTGGTTGCCATTAAAAAACTCAACCAGCATAGCTTGCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTTAGTGTAGTTAGTCATCCAAATCTAGTTAAACTTCTGGGTTATGCGGCTGAAAATGGTGTGAGAGGGATTCAAAGGCTCTTAGTCTACGAGTTTCTTCCAAACAAGAGCTTGGAACACCATCTTTTCCAAAGAATGTCGCCGACTCTTCCATGGAAGCAGAGATTAGAGATTATCATTGGTGCTGCTCAGGGCTTGGCTTATCTACATGGAGGATTAGAAGCTCAGGTGATATATCGTGATTTTAAATCTTCGAACGTGCTATTGGACGAGAACTTCAAGCCTAAACTCTCAGACTTTGGCCTTGCTAGAGAAGGACCAAGTGGTGATCACTCACACGTTTCTACAGCAGTGGTTGGAACGCATGGATATGCTGCTCCTGAATACATTGAGACAGGTCGTCTAAAGAGCCAATGCGATGTATGGAGTTTCGGTGTGGTTCTGTATGAACTTCTCACGGGCAGACGAGCTTTGGATAGAAACCGTCCCATGGGAGAGCAGAAACTTCTTCAGTGGGTGAGACAATTTCCGGTTGACAGTAGTATGTTCACCATGTTAATTGATCCTCGACTCAGAAACCAGTATTCCTTGTCTTCCGCCCGGGAAGTTGCAAAGTTGGCAGACCGTTGCCTGAACAAAAATGCGATGAGTCGGCCAGCAATGACAGAAGTAGTTGAAAGTTTACAGAAAGCGCTACTAATGACGGAAGAGAAAACAAGCTCTAGTAGCAGTAAAAATCAGTCTCATCGGGTCTTGTTATCTCCAAGATTTGTTGATCAAAAGCATGATATGGTTAGAAAACAAGGGAAGGTTTGA 1200 42.58 MKCFFYPKGKSKSKGISKSAPELNQDEKSNKSAKANGFRPSNSLPSRSIPELYKEKEQNLRAFSLQELVDATNGFSRMLKIGEGGFGSVYKGRLKPITPNGEPVVVAIKKLNQHSLQGHKEWLAEVQFLSVVSHPNLVKLLGYAAENGVRGIQRLLVYEFLPNKSLEHHLFQRMSPTLPWKQRLEIIIGAAQGLAYLHGGLEAQVIYRDFKSSNVLLDENFKPKLSDFGLAREGPSGDHSHVSTAVVGTHGYAAPEYIETGRLKSQCDVWSFGVVLYELLTGRRALDRNRPMGEQKLLQWVRQFPVDSSMFTMLIDPRLRNQYSLSSAREVAKLADRCLNKNAMSRPAMTEVVESLQKALLMTEEKTSSSSSKNQSHRVLLSPRFVDQKHDMVRKQGKV 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32176348 32180676 - MELO3C013888.2.1 Cme06g02513 331662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02513 399 PANTHER OS01G0588500 PROTEIN-RELATED 23 375 - -
Cme06g02513 399 Gene3D Transferase(Phosphotransferase) domain 1 161 382 - -
Cme06g02513 399 Pfam Protein kinase domain 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02513 399 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 23 375 - -
Cme06g02513 399 SUPERFAMILY Protein kinase-like (PK-like) 58 370 IPR011009 -
Cme06g02513 399 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02513 399 MobiDBLite consensus disorder prediction 34 48 - -
Cme06g02513 399 Gene3D Phosphorylase Kinase; domain 1 36 160 - -
Cme06g02513 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cme06g02513 399 CDD STKc_IRAK 81 358 - -
Cme06g02513 399 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Cme06g02513 399 MobiDBLite consensus disorder prediction 1 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02513 - - K00924 csv:101208656 740.725
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme04g00046 Cme06g02513 CCT
Cme04g00046 Cme06g02513 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01646 Cme-Chr5:25611741 Cme06g02513 Cme-Chr6:32176348 1.29E-27 dispersed
Cme06g02513 Cme-Chr6:32176348 Cme08g01293 Cme-Chr8:9366802 5.34E-115 dispersed
Cme04g00046 Cme-Chr4:311634 Cme06g02513 Cme-Chr6:32176348 3.56E-175 wgd
Cme06g00345 Cme-Chr6:2134537 Cme06g02513 Cme-Chr6:32176348 2.52E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001810 3 2 1 0 2 0 4 0 0 2 2 0 4 2 0 4 0 0 4 0 2 0 0 0 0 2 0 0 0 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64980 PF00069 Pkinase 1.30E-47 CL0016 Cme PK