Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02515 ATGTCACTGTTCTTACATCATCTGGTTTCGTCTTCTTGCTTTCTCACAGATACAAAATCAGCGATACCATTTCATACAAAGATCGCTAAGCTTTTGCAGTTTTTTGGCAATGTCATTCCCGTAGAATTAACCAACGAAAGAACAACACATACCCAACAAAAACCCAGAGCTTTTGATCCTACAAAACCCCCCCCCCCCCCCCACCCACAAGAAGATTATTCCCTTCTTCAATCATTGAACCCAGCAAATTCCAACCCAAGATTTCATCTCTGTGAATTTCTCTTCCCAATTCGGCTTTCTGGGTCTGTTCATGAAGAACTCATTTCGGTTTTTTCATCAATGGCGGTTTCTAAGCTTTTCCCTGAGTTCTACGAAGGGTTTTCTATGACCCAATCCACTTCTCTGTTATCTCGATTTCCGTCTTTCATGTCATCACCTTCTTCCTTTTCTTTCCCTTTTGCAACTAAATCACTGGCTTTTCAAATCTTTCGTCATTTTCGTTGTCGCGAGTTACTTCGAGTTCACTCGCGATTACTTATCATCCTCTCTTTGCCTTTCATTTACTTCTTTCTTTCGAACCCTCGTCGTTCTGTTGTTCTCAAGTTGTTTGTTCTACTTTTCTTCTCCATCGCTGTTTTGGTCTTCCTCAATCTTGCTGTCCCTCGTCTTCCTTCTCCGATTCGTTTGTTTCTTGTTCGATCATCCCCAATTAGCGCTTTCTCATCTTCTGCTGCTAAGAAGGCTGTTTCCAATGTTCGTTGGTCAATTGGATCGAAACCCAAATCGGAGAAACGGTTGATGTCGGGTTCTTGGGTCAGAGTTTACAGTAATGGGGATGTTTACGAGGGGGAATTTCACAAAGGGAGGTGCTCAGGTAGTGGGGTTTATCACTATCATATGAGTGGAAGGTATGAAGGCGATTGGATTGATGAGAAGTATGATGGGTATGGAGTAGAAACATGGGCTAAAGGGAGTAGGTACCGTGGTCAGTACAGACAAGGATTGAGGAATGGGATTGGGATTTATAGATTCTACACAGGGGATGTCTACGCTGGGGAGTGGTCTAATGGCCAGTGCCATGGCTGTGGAGTTCATACTTGCCAAGATGGGAGCCGCTATGTTGGGGAGTTTAAGTGGGGCGTTAAACATGGACTGGGTCACTACCATTTTAGAAACGGAGACACATATGCAGGAGAGTATTTTGCAGACAAGATGCACGGTTTTGGAGTTTATCGGTTTGGCAATGGACATCGTTATGAGGGAGCTTGGCACGAAGGAAATAGGCAAGGACTTGGTGTGTATACTTTTAGGAATGGAGAGACACAATCTGGTCACTGGCAAAATGGGGTTCTTGATGTTCCCAGCCTTGAAATCAGCCATCCAGGGTCTTCTTATGCTGTCAGCCACGCTAAAGTTCTCGCTGCGGTCCAGGAAGCAAGAAGAGCTGCAGAGAAAGCGTTCAATGCAGGAAGAGTGGACGAAAGAGTTAACAAAGCTGTAGCTGCTGCAAACAAAGCAGCGAATGCAGCAAGAGTTGCAGCCGTGAAGGCTGTGCAGAAACAAATGGATCAAGAGACCAGCACCAACCCACCGATCTTACTGGTACCTGCCTGGAACCTGCTTGCACAGGCGTGCAGAACAGATGGCCGATCGAGGAGCAGATGGGTTTATTTCCTTCTCTCTCCCTCACTTTCAATGTAG 1701 45.39 MSLFLHHLVSSSCFLTDTKSAIPFHTKIAKLLQFFGNVIPVELTNERTTHTQQKPRAFDPTKPPPPPHPQEDYSLLQSLNPANSNPRFHLCEFLFPIRLSGSVHEELISVFSSMAVSKLFPEFYEGFSMTQSTSLLSRFPSFMSSPSSFSFPFATKSLAFQIFRHFRCRELLRVHSRLLIILSLPFIYFFLSNPRRSVVLKLFVLLFFSIAVLVFLNLAVPRLPSPIRLFLVRSSPISAFSSSAAKKAVSNVRWSIGSKPKSEKRLMSGSWVRVYSNGDVYEGEFHKGRCSGSGVYHYHMSGRYEGDWIDEKYDGYGVETWAKGSRYRGQYRQGLRNGIGIYRFYTGDVYAGEWSNGQCHGCGVHTCQDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYRFGNGHRYEGAWHEGNRQGLGVYTFRNGETQSGHWQNGVLDVPSLEISHPGSSYAVSHAKVLAAVQEARRAAEKAFNAGRVDERVNKAVAAANKAANAARVAAVKAVQKQMDQETSTNPPILLVPAWNLLAQACRTDGRSRSRWVYFLLSPSLSM 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32195241 32198794 - MELO3C013890.2.1 Cme06g02515 331664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02515 566 PANTHER HISTONE H3 K4-SPECIFIC METHYLTRANSFERASE SET7/9 FAMILY PROTEIN 98 527 - -
Cme06g02515 566 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 98 527 - -
Cme06g02515 566 Pfam MORN repeat 327 349 IPR003409 -
Cme06g02515 566 Pfam MORN repeat 396 418 IPR003409 -
Cme06g02515 566 Pfam MORN repeat 350 372 IPR003409 -
Cme06g02515 566 Pfam MORN repeat 419 440 IPR003409 -
Cme06g02515 566 Pfam MORN repeat 373 395 IPR003409 -
Cme06g02515 566 Pfam MORN repeat 281 299 IPR003409 -
Cme06g02515 566 Pfam MORN repeat 304 326 IPR003409 -
Cme06g02515 566 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 266 373 - -
Cme06g02515 566 Gene3D - 402 467 - -
Cme06g02515 566 Gene3D - 357 401 - -
Cme06g02515 566 Gene3D - 311 356 - -
Cme06g02515 566 Gene3D - 263 310 - -
Cme06g02515 566 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 368 458 - -
Cme06g02515 566 SMART morn 279 300 IPR003409 -
Cme06g02515 566 SMART morn 325 346 IPR003409 -
Cme06g02515 566 SMART morn 394 415 IPR003409 -
Cme06g02515 566 SMART morn 371 392 IPR003409 -
Cme06g02515 566 SMART morn 417 438 IPR003409 -
Cme06g02515 566 SMART morn 302 323 IPR003409 -
Cme06g02515 566 SMART morn 348 369 IPR003409 -
Cme06g02515 566 MobiDBLite consensus disorder prediction 46 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02515 - - - csv:101208169 760.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00813 Cme-Chr5:10442042 Cme06g02515 Cme-Chr6:32195241 1.09E-178 dispersed
Cme06g02515 Cme-Chr6:32195241 Cme07g00868 Cme-Chr7:8696884 6.66E-103 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010482 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 32