Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02531 ATGCACCCCTACCCTCCTGGATTGCCGCATGTTTTAGAATTTATATTTCATTTGCACAATCCTCAACGTGTGGAGGTCGTCACTATATTGCTAATAGCAGCAAGCAAGGATTTTCCCAGCACACCACTCTGGCGTAATGGGCCTCCTGATAAGCCAGTATTGTGCAACGCCTGTGGATCTCGATGGAGGACGAAAGGAACTCTAGCAAACTATACCCCTCTTCATGCACGGGCGGATCCTGATGAGTTTGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGACTTGTGGTTGGGGTTATTCCTGATCATGCTCAGAGCTTTCACAAGGTAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGCGCAGATGCTAGTGATCTGACAGGTCCCTCACAATCAACAGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTGTACACCATTTTACGTGAACAACAATCTTACTTTTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCGAGTTCAATTGCTCGAGAAGAGGAATCCGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTTTAAACGAGGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAGCTCAGAACACGTTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTACTGGACAAGGGTTCTTGAATGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGCAATTCCCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAAAATCAGCAAGAGTTGATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGTCCTCAGTTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCAAAAAGAGAAGACTGCAAGATTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAACAATATAATTTACTCAAGAAATGCAGTAGTGGAGAATCTGTCCAAGGTTTTGCTGCTGCATCAAGTAGCCTTACGAATGGCAAGAGAGTGCTGGATGGCCAGAACAAAAAGCTTTCAGAAACCAGGACCACAATGAAGAGTCCCAAAAGGGTGATGACGAAGACAAGCACGGAAAGCAAGGAACTTGTTGACAGTGACGGTTCTTGCTTCAGTCCGAGAAGTTTATTTGCTTTGCCTTCTGACGGAGGTTCCTTCACACTGGAAGCGCTGCATTTTGATGAAGATAGTTCTGACCAAGATCTCCTACTGGATGTGAGGTCAAACAGTTCCTTTCCCCAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTTGTTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1698 43.52 MHPYPPGLPHVLEFIFHLHNPQRVEVVTILLIAASKDFPSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEFEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVIPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYEAQNTFVNFSTLGIGRKHSTGQGFLNEQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVEQYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSETRTTMKSPKRVMTKTSTESKELVDSDGSCFSPRSLFALPSDGGSFTLEALHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFVAQQASNSSSSVNLRLMHR 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32338959 32345347 - MELO3C013904.2.1 Cme06g02531 331680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02531 565 Pfam Asx homology domain 311 394 IPR028020 -
Cme06g02531 565 MobiDBLite consensus disorder prediction 131 150 - -
Cme06g02531 565 Pfam GATA zinc finger 40 67 IPR000679 GO:0006355|GO:0043565
Cme06g02531 565 Gene3D - 38 109 IPR013088 GO:0006355|GO:0008270
Cme06g02531 565 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 322 431 IPR044867 -
Cme06g02531 565 SMART GATA_3 34 81 IPR000679 GO:0006355|GO:0043565
Cme06g02531 565 Gene3D - 315 398 IPR038108 -
Cme06g02531 565 MobiDBLite consensus disorder prediction 136 150 - -
Cme06g02531 565 PANTHER OSJNBB0038F03.10 PROTEIN 40 564 IPR044589 -
Cme06g02531 565 PANTHER GATA TRANSCRIPTION FACTOR 26 40 564 - -
Cme06g02531 565 CDD ZnF_GATA 39 77 IPR000679 GO:0006355|GO:0043565
Cme06g02531 565 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 40 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02531 Cme-Chr6:32338959 Cme01g02907 Cme-Chr1:35749345 8.56E-06 dispersed
Cme04g00035 Cme-Chr4:218657 Cme06g02531 Cme-Chr6:32338959 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41558 PF13919 ASXH 2.90E-09 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02531 - - cmo:103490848 1090.1