Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02531 ATGCACCCCTACCCTCCTGGATTGCCGCATGTTTTAGAATTTATATTTCATTTGCACAATCCTCAACGTGTGGAGGTCGTCACTATATTGCTAATAGCAGCAAGCAAGGATTTTCCCAGCACACCACTCTGGCGTAATGGGCCTCCTGATAAGCCAGTATTGTGCAACGCCTGTGGATCTCGATGGAGGACGAAAGGAACTCTAGCAAACTATACCCCTCTTCATGCACGGGCGGATCCTGATGAGTTTGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGACTTGTGGTTGGGGTTATTCCTGATCATGCTCAGAGCTTTCACAAGGTAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGCGCAGATGCTAGTGATCTGACAGGTCCCTCACAATCAACAGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTGTACACCATTTTACGTGAACAACAATCTTACTTTTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCGAGTTCAATTGCTCGAGAAGAGGAATCCGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTTTAAACGAGGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAGCTCAGAACACGTTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTACTGGACAAGGGTTCTTGAATGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGCAATTCCCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAAAATCAGCAAGAGTTGATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGTCCTCAGTTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCAAAAAGAGAAGACTGCAAGATTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAACAATATAATTTACTCAAGAAATGCAGTAGTGGAGAATCTGTCCAAGGTTTTGCTGCTGCATCAAGTAGCCTTACGAATGGCAAGAGAGTGCTGGATGGCCAGAACAAAAAGCTTTCAGAAACCAGGACCACAATGAAGAGTCCCAAAAGGGTGATGACGAAGACAAGCACGGAAAGCAAGGAACTTGTTGACAGTGACGGTTCTTGCTTCAGTCCGAGAAGTTTATTTGCTTTGCCTTCTGACGGAGGTTCCTTCACACTGGAAGCGCTGCATTTTGATGAAGATAGTTCTGACCAAGATCTCCTACTGGATGTGAGGTCAAACAGTTCCTTTCCCCAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTTGTTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1698 43.52 MHPYPPGLPHVLEFIFHLHNPQRVEVVTILLIAASKDFPSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEFEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVIPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYEAQNTFVNFSTLGIGRKHSTGQGFLNEQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVEQYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSETRTTMKSPKRVMTKTSTESKELVDSDGSCFSPRSLFALPSDGGSFTLEALHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFVAQQASNSSSSVNLRLMHR 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32338959 32345347 - MELO3C013904.2.1 Cme06g02531 331680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02531 565 Pfam Asx homology domain 311 394 IPR028020 -
Cme06g02531 565 MobiDBLite consensus disorder prediction 131 150 - -
Cme06g02531 565 Pfam GATA zinc finger 40 67 IPR000679 GO:0006355|GO:0043565
Cme06g02531 565 Gene3D - 38 109 IPR013088 GO:0006355|GO:0008270
Cme06g02531 565 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 322 431 IPR044867 -
Cme06g02531 565 SMART GATA_3 34 81 IPR000679 GO:0006355|GO:0043565
Cme06g02531 565 Gene3D - 315 398 IPR038108 -
Cme06g02531 565 MobiDBLite consensus disorder prediction 136 150 - -
Cme06g02531 565 PANTHER OSJNBB0038F03.10 PROTEIN 40 564 IPR044589 -
Cme06g02531 565 PANTHER GATA TRANSCRIPTION FACTOR 26 40 564 - -
Cme06g02531 565 CDD ZnF_GATA 39 77 IPR000679 GO:0006355|GO:0043565
Cme06g02531 565 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 40 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02531 - - - cmo:103490848 1090.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02531 Cme-Chr6:32338959 Cme01g02907 Cme-Chr1:35749345 8.56E-06 dispersed
Cme04g00035 Cme-Chr4:218657 Cme06g02531 Cme-Chr6:32338959 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01757 CCT,ECH 92 365 C2C2-Gata Transcription Factor Family AT5G25830 52.3 3.4e-70 262.3
Cme07g01697 . 83 365 C2C2-Gata Transcription Factor Family AT5G66320 52.2 7.4e-65 244.6
Cme08g00904 . 104 262 C2C2-Gata Transcription Factor Family AT4G36240 52.3 5.8e-40 161.4
Cme03g01757 CCT,ECH 116 365 C2C2-Gata Transcription Factor Family AT4G32890 52.6 6.5e-60 228.0
Cme04g00035 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 3.0e-134 475.7
Cme06g02531 . 40 541 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-129 457.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41558 PF13919 ASXH 2.90E-09 No_clan Cme TF