Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02544 ATGATGTACGGACAAATTAACGGTTGTGAATCCGATTTTGTTCTTCTTGAAACCATTCGCCGTCATTTATTGGGAGATTCAGAGGCTTTCCGATGTGGGAATTTCTCCCTTGCCGGAACTACCTCCCCTGTTTTCTGTCGGAGCTCAAGTTTCGGCAGCTTGTACCCTTGTTTAACTGAAAATTGGGGCGATTTGCCTCTCAAAGAGGATGATTCCGAAGACATGCTCCTCGCCGGCGTCCTCCGCGACGCCGTCAACGTCGGTTGGGTTCCGTCGCTTGAGACTTTCAATTTTGGATTCTCTGATGTCAAGCCGGAGCCGGAGATTCTCTCTCCGGTGAACATCTTGCCCGAAGTTAAGGTTCCGTCGCCGGAGGTGGCTACGGCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTACGGCAGCGGCCGTGGGGTAAGTTTGCGGCGGAGATTCGAGACCCGGCGAAGAACGGAGCTCGGGTTTGGCTTGGGACGTTTGAGACGGCGGAGGATGCGGCGCTTGCTTATGACCGGGCTGCTTATCGGATGCGTGGCTCCAAAGCTCTTCTTAACTTTCCACTTCGAGTTAATTCGGGTGAACCCGATCCGGTTAGAGTGACGTCGAAGCGGTCGTCACCTCGATCGTCACCGGAACCTACTTCGTCTTTGTCGTCGGTTGAGAGTGGGTCACCTAAGCGACGGAAGAAGGCGGAAGGCACCGCGGTGTCAACGCCGGAGTTGAATCAATTAGTGGTGGGGACCATTGGATTGCAAGTGGAAGCTGATGTGGCAAAATGTACAAGTGGCGAGTAA 828 54.59 MMYGQINGCESDFVLLETIRRHLLGDSEAFRCGNFSLAGTTSPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMLLAGVLRDAVNVGWVPSLETFNFGFSDVKPEPEILSPVNILPEVKVPSPEVATALPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKAEGTAVSTPELNQLVVGTIGLQVEADVAKCTSGE 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32446548 32447639 - MELO3C013916.2.1 Cme06g02544 331693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02544 275 Gene3D AP2/ERF domain 139 201 IPR036955 GO:0003700|GO:0006355
Cme06g02544 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 41 253 - -
Cme06g02544 275 SUPERFAMILY DNA-binding domain 140 200 IPR016177 GO:0003677
Cme06g02544 275 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Cme06g02544 275 PANTHER DNA-BINDING DOMAIN 41 253 IPR044808 GO:0003700|GO:0009873
Cme06g02544 275 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Cme06g02544 275 MobiDBLite consensus disorder prediction 204 252 - -
Cme06g02544 275 MobiDBLite consensus disorder prediction 209 233 - -
Cme06g02544 275 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Cme06g02544 275 Pfam AP2 domain 140 190 IPR001471 GO:0003700|GO:0006355
Cme06g02544 275 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Cme06g02544 275 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00011 Cme-Chr6:86972 Cme06g02544 Cme-Chr6:32446548 3.31E-29 dispersed
Cme06g02544 Cme-Chr6:32446548 Cme08g00254 Cme-Chr8:1650699 1.61E-32 dispersed
Cme09g01551 Cme-Chr9:20528876 Cme06g02544 Cme-Chr6:32446548 2.75E-30 dispersed
Cme06g02544 Cme-Chr6:32446548 Cme06g02545 Cme-Chr6:32465953 1.62E-31 tandem
Cme07g01810 Cme-Chr7:23529350 Cme06g02544 Cme-Chr6:32446548 6.38E-30 transposed
Cme06g02544 Cme-Chr6:32446548 Cme09g01585 Cme-Chr9:20724994 1.43E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41559 PF00847 AP2 1.10E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02544 K09286 - csv:101203663 484.182