Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02551 TCTGACACTCTTTTACTTCTTTCCTTTCCATCATTATTTTTATTTTATTTTATTTTATGTGAAAAAACAATTTATTTATTTCTTTTTCCTATTTCCTCTTTCTATATAATCCCTCTTTTCTCCCCTTCTTCTTGGACCACAACTCTCTTCCTTCTTTCTTCTTTCTTCTTCCCTTCTTCCCTTCTTCCCTTCTTCTTCAAATTCTCTCTTCAAATTCATCAAAAATCCAAAACCATGATCCCTTCAAAACACCATAATCTCGGCTTAACCCTTGGATTAAGCGTCGATTCTCCTCCTCTACATCTCAATTCTTGGACTAATGATGCTTCTTCAGATCGAACATCGGAAACAGGGAGATCGCTTCTCAGAGGCATCGATGTGAATCGGATGCCGCCGTCGACGGCGGATTGTGAAGAGGAGGCGGCGATGTCGAGCCCTAACAGTACGGTGTCGAGTGTGAGTGGAAAACGTAGTGAACGTGAGATGAACGGTGAAGATCTGGATGGGGATAGAGCTTGTTCGAGAGGGATTAGTGATGAAGAAGACGGTGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTTTTGGAAGAAAGCTTCAAAGAACATAATACTCTCAATCCGATTTTCTCGGGAAACAAACGGTTTAATATGGTGGTGGGAAAAATTTACGAGGGTGTTTTGAAGTTGGCGTTGGCGAAACAATTGGGTCTCCGGCCGAGACAAGTCGAAGTTTGGTTCCAAAATAGAAGAGCAAGGACAAAGTTGAAGCAAACGGAAGTAGATTGCGAATTCCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGACGGTTGCAAAAAGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCATGTGAGCGTGTCGCCGTCCCACCCTCCACATCAGCCCCCCAGCCCACCCTCACGCGAATGCCCCAGGCCCAACCTCAGGCCCATCACCCTCGCCCTATCCACCACATCAATCCCTGGGCCTCCCCCATACCCACCCGGCCCTTCAACGCCCTTCACCCTCGCTCGTAA 1113 46.09 SDTLLLLSFPSLFLFYFILCEKTIYLFLFPISSFYIIPLFSPSSWTTTLFLLSSFFFPSSLLPFFFKFSLQIHQKSKTMIPSKHHNLGLTLGLSVDSPPLHLNSWTNDASSDRTSETGRSLLRGIDVNRMPPSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPIFSGNKRFNMVVGKIYEGVLKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAPQPTLTRMPQAQPQAHHPRPIHHINPWASPIPTRPFNALHPRS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32504663 32506232 - MELO3C013923.2.1 Cme06g02551 331700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02551 370 CDD bZIP 252 293 - -
Cme06g02551 370 ProSiteProfiles 'Homeobox' domain profile. 183 261 IPR001356 GO:0003677
Cme06g02551 370 CDD homeodomain 187 262 IPR001356 GO:0003677
Cme06g02551 370 SUPERFAMILY Homeodomain-like 185 269 IPR009057 -
Cme06g02551 370 ProSitePatterns 'Homeobox' domain signature. 236 259 IPR017970 GO:0000981|GO:0006355
Cme06g02551 370 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 102 359 - -
Cme06g02551 370 PANTHER - 102 359 - -
Cme06g02551 370 MobiDBLite consensus disorder prediction 322 338 - -
Cme06g02551 370 MobiDBLite consensus disorder prediction 140 157 - -
Cme06g02551 370 MobiDBLite consensus disorder prediction 321 370 - -
Cme06g02551 370 Pfam Homeodomain 235 259 IPR001356 GO:0003677
Cme06g02551 370 Pfam Homeobox associated leucine zipper 261 295 IPR003106 GO:0006355|GO:0043565
Cme06g02551 370 SMART halz 261 304 IPR003106 GO:0006355|GO:0043565
Cme06g02551 370 MobiDBLite consensus disorder prediction 158 189 - -
Cme06g02551 370 MobiDBLite consensus disorder prediction 106 189 - -
Cme06g02551 370 Gene3D - 191 259 - -
Cme06g02551 370 Pfam HD-ZIP protein N terminus 103 161 IPR006712 GO:0005634
Cme06g02551 370 Coils Coil 260 297 - -
Cme06g02551 370 SMART HOX_1 185 265 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00049 Cme-Chr6:338666 Cme06g02551 Cme-Chr6:32504663 3.13E-91 dispersed
Cme06g01725 Cme-Chr6:19552711 Cme06g02551 Cme-Chr6:32504663 2.43E-55 dispersed
Cme06g02551 Cme-Chr6:32504663 Cme09g01407 Cme-Chr9:19255000 5.80E-41 dispersed
Cme07g00249 Cme-Chr7:1612315 Cme06g02551 Cme-Chr6:32504663 3.56E-10 dispersed
Cme06g02551 Cme-Chr6:32504663 Cme08g00681 Cme-Chr8:4509619 4.77E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41561 PF04618 HD-ZIP_N 1.70E-17 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02551 K09338 - csv:101223208 513.457