Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02554 ATGGAAGATCCTCTTCAAAGATTCCAATTTCACTCTCAATCTTCATCTTCTTCATCAGATATCAAAAACTGCATCAAAGAAAAAACCTCCAAGAAAGTTAAACTCGGAAGCGACGGCAAACACCCAACTTATCGCGGCGTTCGAATGCGACAATGGGGGAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCTAGAATTTGGTTAGGTACATTTTCCACGCCAGAAATGGCCGCTAGAGCTCACGACGTTGCCGCCAAAACGATCAAAGGTCATTCTGCTTACCTTAATTTCCCTGAATTGGCTCATCGTCTCCCTCGTCCGGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCTGCTAAAGCTGCCCTGTTTAATGATGAACAAAACCCCGGTGCGAAATCTGAATTGAATCTTAATTGCTGTGGCTCTTCTGCTGTTGCGGTCAAATCCGGTGGGGAAATTGATGATACTTTCTTTGATTTACCTGATCTGTTTATTGATGATCCTAATCATCAAATTGATACATTCTGTTTCTCGCAATTTGTTCCGATTGATGGGTTTGACTCTGTTTTTACACGGCCGTTGTCGCCATCCTCCCCGTCAGATTATTTCACTTACAGAGGTAGTCTTCTCTAG 645 43.41 MEDPLQRFQFHSQSSSSSSDIKNCIKEKTSKKVKLGSDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAAKTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAALFNDEQNPGAKSELNLNCCGSSAVAVKSGGEIDDTFFDLPDLFIDDPNHQIDTFCFSQFVPIDGFDSVFTRPLSPSSPSDYFTYRGSLL 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32548713 32549906 + MELO3C013926.2.1 Cme06g02554 331703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02554 214 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Cme06g02554 214 Pfam AP2 domain 42 93 IPR001471 GO:0003700|GO:0006355
Cme06g02554 214 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Cme06g02554 214 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Cme06g02554 214 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Cme06g02554 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 181 - -
Cme06g02554 214 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Cme06g02554 214 MobiDBLite consensus disorder prediction 1 42 - -
Cme06g02554 214 MobiDBLite consensus disorder prediction 24 42 - -
Cme06g02554 214 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Cme06g02554 214 MobiDBLite consensus disorder prediction 7 23 - -
Cme06g02554 214 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Cme06g02554 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 14 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01127 Cme-Chr4:15385984 Cme06g02554 Cme-Chr6:32548713 1.04E-37 dispersed
Cme06g00043 Cme-Chr6:308992 Cme06g02554 Cme-Chr6:32548713 4.24E-42 dispersed
Cme06g02554 Cme-Chr6:32548713 Cme11g02291 Cme-Chr11:29999599 3.18E-41 dispersed
Cme06g02554 Cme-Chr6:32548713 Cme05g01995 Cme-Chr5:28458946 4.28E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41563 PF00847 AP2 1.20E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02554 - - csv:101222736 372.859