Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02571 ATGGCGGTTTCCCCTGTTTTCATCTTCCTCCTCTGTTTTCTCCTCTCCTCCCCTGTTTTCTCCTCACAAATTTTCCTTCTACCTCTCTCCCATTCCTTATCATCCTCAATCTCCGATTTCAACAGCACCCACAATCTTCTCAAATCCACCGCCACCCGCTCCTCCGCCCGATTCCACCGCCACCGCCATAACCACCTCTCTCTGCCCCTATCCCCCGGCGGCGATTACACTCTCTCCTTCAACCTCGGCTCTGAGTCTCACAAAATTTCCCTCTATATGGACACCGGCAGCGACCTCGTTTGGTTCCCCTGTTCCCCGTTTGAGTGTATTCTTTGTGAAGGTAAACCAAAAATTCAATCCCCTTTGCCCAAAATCTCAAATAACAAATCAGTTTCCTGCAGCGCCGCCGCCTGCTCCGCCGCTCATGGTGGCTCCCTCTCCGCTTCCCACCTCTGTGCAATTTCTCGATGTCCACTTGAATCCATTGAAATTTCTGAGTGCTCCTCTTTTTCCTGTCCTCCGTTTTATTACGCTTACGGCGATGGGAGTTTAGTTGCTCGGCTTTATAGAGATAGCCTCAGTTTGCCAACGCCAGCGCCATCTCCGCCGATTAATGTTCGGAATTTTACTTTTGGATGTGCCCACACGACGCTTGGCGAACCGGTTGGGGTTGCCGGATTCGGCCGTGGGGTGTTGTCGATGCCCAGTCAACTCGCGACTTTCTCACCTCAACTCGGGAACCGGTTTTCTTATTGTTTGGTTTCTCACTCGTTTGCGGCGGACCGAGTTCGCCGCCCGAGTCCACTGATTCTCGGGCGGTACCACACCGGGGAGACGGAGTTCATTTACACTTCCTTGCTTGAGAATCCAAAACACCCTTATTTTTACTCAGTTGGATTGGCCGGAATATCAGTTGGGAATGTGAGGATTCCAGCGCCGGAGTTCTTGAGAAAAGTTGATGAGAGTGGTAGTGGCGGCGTTGTGGTGGATTCCGGCACTACTTTTACTATGCTCCCGTCAGGTTTGTATGAATCGGTGGTGGCCGAGTTCGAAAACCGTACCGGAAAGGTTGCAAACCGGGCGAGACGGATCGAAGAAAACACCGGGTTGAGCCCTTGCTATTACTACGAGAACTCAGTTGGCGTGCCACGTGTCGTGCTACATTTTGTTGGGGAGAAATCCAGTGTGGTGCTTCCTAGGAAGAACTATTTCTATGAGTTTTTGGACGGTGGAGATGGGGTGGTGGAGGTGGGGAGGAAGAGAAAAGTTGGGTGTTTGATGCTAATGAACGGTGGAGATGAGGCTGAGCTGGCAGGTGGGCCTGGTGCCACGCTTGGGAACTACCAACAACAAGGTTTTGAGGTGGTTTATGATTTGGAAAAGAACCGGGTTGGATTCGCTCGGCGGCAATGCTCCACTCTTTGGGACAATTTGAACCGGAGTTAG 1446 51.73 MAVSPVFIFLLCFLLSSPVFSSQIFLLPLSHSLSSSISDFNSTHNLLKSTATRSSARFHRHRHNHLSLPLSPGGDYTLSFNLGSESHKISLYMDTGSDLVWFPCSPFECILCEGKPKIQSPLPKISNNKSVSCSAAACSAAHGGSLSASHLCAISRCPLESIEISECSSFSCPPFYYAYGDGSLVARLYRDSLSLPTPAPSPPINVRNFTFGCAHTTLGEPVGVAGFGRGVLSMPSQLATFSPQLGNRFSYCLVSHSFAADRVRRPSPLILGRYHTGETEFIYTSLLENPKHPYFYSVGLAGISVGNVRIPAPEFLRKVDESGSGGVVVDSGTTFTMLPSGLYESVVAEFENRTGKVANRARRIEENTGLSPCYYYENSVGVPRVVLHFVGEKSSVVLPRKNYFYEFLDGGDGVVEVGRKRKVGCLMLMNGGDEAELAGGPGATLGNYQQQGFEVVYDLEKNRVGFARRQCSTLWDNLNRS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32737329 32739190 + MELO3C013943.2.1 Cme06g02571 331720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02571 481 Gene3D Acid Proteases 270 476 IPR021109 -
Cme06g02571 481 ProSiteProfiles Peptidase family A1 domain profile. 76 467 IPR033121 -
Cme06g02571 481 CDD pepsin_A_like_plant 76 471 IPR034161 -
Cme06g02571 481 PANTHER OS07G0603500 PROTEIN-RELATED 1 476 - -
Cme06g02571 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 327 338 IPR001969 GO:0004190|GO:0006508
Cme06g02571 481 Pfam Xylanase inhibitor N-terminal 76 256 IPR032861 -
Cme06g02571 481 PANTHER BNAA01G17170D PROTEIN 1 476 - -
Cme06g02571 481 Gene3D Acid Proteases 54 261 IPR021109 -
Cme06g02571 481 Pfam Xylanase inhibitor C-terminal 296 467 IPR032799 -
Cme06g02571 481 SUPERFAMILY Acid proteases 71 476 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02571 - - - csv:101219587 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02571 Cme-Chr6:32737329 Cme12g00992 Cme-Chr12:17377094 6.56E-58 dispersed
Cme06g02571 Cme-Chr6:32737329 Cme09g01440 Cme-Chr9:19630436 5.53E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g535 Blo02g01043 Blo03g00160 Bda06g00028 Bda08g00578 Bpe05g00581 Bpe07g00178 . . . Cmo16g01192 . . . . Sed04g1715 Cpe14g00944 . Bhi11g00193 Tan01g2028 Cmetu06g1269 . . Mch10g1562 . Cla10g00257 Cam10g0263 Cec10g0271 Cco10g0269 Clacu10g0265 Cmu10g1108 Cre10g0516 Cone8ag0396 . Cone6ag0672 Cone9ag0679 Lsi07g01302 . . Cme06g02571 . . . . . . . Bma12g00644 . . . . Cma16g01140 . Car16g01075 . . . . . . . . . . . . . . . . . Csa03g00275 Chy06g02047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010679 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 32