Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02576 GGGAAGGGGGAGTTGGAATTTTCAGCTGCTTTTTCTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACAACAAGAACAAGAACTAGACGAAGAACAAGAAGAAGGGTTTTCTTATTTTGCTTTACCTAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGCGGCGGTGGCGGTGGCGGTGGTGGTTGTGTTCCTTCGCTTCCTCCTGAGACTCCTGCTGTTGAACCGGTCGCTGGAGCTGGTGTTGGTAACGCCATTTTTCCAGGTGGATTGGAGCGATGTGGGGTTGGATTAGAAGATTTGGAGAGTATGTGGTCGGAAACAGCCGGCCCAGAACCGTCGTTTCTCCGATGGTTTGCCGGAGATGTTGAAGATCCCAGTTTAGGGAGTAAAAGTGTTTTGGCTAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATCGTCGATCAGGGTTCCGAATTTGACACCGGTTCTGGTAATGTTCTTGCCAACATTAATCCTAATTTATCGTTTCCTCTTGCTGCTTGTGCTGGGTTTTCTGATGTTAATGGTAACAATAAGTCATTTAATAGAAACACTTGTGGAGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGTTCGAACAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTACTGGGTCTCTTGAAAATCTTGTTGTTCCCGTTTCTGGTATGATTTATCCTCAACAACTTCAGCCATTCGAGAGCCCTGATGAGAAACCTCAGAATTTAAATACTCAGGTTTTGTTGAACCAACATCAGCAGCCTCAAAACCCTAGCTTTTTTGTGCCATTGACGTTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCATAATTCGAGTGGAGGACTTGACCCCAATCCGAATGGGCAGATCCTGAAAGTCCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAGGTGTTGCAGCAGCAGCAGCAGCAGCAGCTTGGTTATCCTCCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCGAAGCCAAAAGTTGTAGGGCTTGGCGACGAAATGTCGTATCACAATCCCCCACAGCAACAGCATCAGCATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCATACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAATAACCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTTTGATGTGATCTTCAAGATGGGTGCTTACAAAGTGTTCTCGGAAATTTCCCCACTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTTGAGGCGCTCGATGACGTTGATCGAATTCACATTGTAGATTTCGATATTGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAGCCGGGGTGCACCATCGCTCAAAATCACTGCTTTTGCCTCTCCCTCAACTCACCATCCAATTGAACTTGGGCTTATGCGCGAAAATCTCACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTTGAAGTGGTTAACTTTGATTCTTTGAACCAGAACTCCTTTCCTTTGCCATTTACACGGTCCAGCGAAAACGAGGCCATTGCAGTAAACTTCCCTCTATGGTGTTCATCAAATCAACCAGCTATGCTTCCGTCTCTCCTCCGCTTCATCAAGCAACTCTCACCGAAAATTGTGGTTTCACTGGACCGAGGTTGTGATCGAAGTGACCTCCCCTTTCCTCAGCATATGCTTCAGGCACTTCAGTCTTACATTAACCTTCTGGAATCTCTGGATGCTATCAATATGAATTCGGATGCTGTGAACAAGATCGAAAGGTTTCTTTTGCAACCCAGAATTGAAAGTACGGTCCTGGGACGACTTCGAGCACCTGAAAGAATGCCCCTTTGGAAGACACTCTTTGCCTCAGCTGGGTTTACGCCTGTAACCTTTAGCAACTTCACTGAAACTCAAGCAGAATGTGTGGCAAAGAGAACTTCTGTGAGGGGATTTCAAGTTGAGAAACGCCAAGCTTCCCTAGTTTTGTGCTGGCAGCGTCGGGAGCTCATATCTGCTTCAGCATGGAGATGTTGA 2307 46.81 GKGELEFSAAFSSSSPICSGFAEKWVKKGEEQQEQELDEEQEEGFSYFALPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGGGGGCVPSLPPETPAVEPVAGAGVGNAIFPGGLERCGVGLEDLESMWSETAGPEPSFLRWFAGDVEDPSLGSKSVLANGNIPFDLDGNAGIGIVDQGSEFDTGSGNVLANINPNLSFPLAACAGFSDVNGNNKSFNRNTCGGVVNYKSSSLGSNNRHGNFNVQNPIFTGSLENLVVPVSGMIYPQQLQPFESPDEKPQNLNTQVLLNQHQQPQNPSFFVPLTFGQQEQQLQPQLKRHNSSGGLDPNPNGQILKVPFMDPGNEIFLRNHQLQVLQQQQQQQLGYPPGLQFLPQQKAMSPKPKVVGLGDEMSYHNPPQQQHQHALLDQLYKAAELVGTGNFSYAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRSRGAPSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVVNFDSLNQNSFPLPFTRSSENEAIAVNFPLWCSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFQVEKRQASLVLCWQRRELISASAWRC 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32776191 32778739 - MELO3C013947.2.1 Cme06g02576 331725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02576 768 PANTHER SCARECROW-LIKE PROTEIN 6 32 767 - -
Cme06g02576 768 MobiDBLite consensus disorder prediction 59 95 - -
Cme06g02576 768 Pfam GRAS domain family 406 767 IPR005202 -
Cme06g02576 768 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 32 767 IPR005202 -
Cme06g02576 768 MobiDBLite consensus disorder prediction 59 78 - -
Cme06g02576 768 ProSiteProfiles GRAS family profile. 396 767 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02576 Cme-Chr6:32776191 Cme07g01705 Cme-Chr7:22595735 1.80E-72 dispersed
Cme11g02225 Cme-Chr11:29468602 Cme06g02576 Cme-Chr6:32776191 3.11E-37 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41565 PF03514 GRAS 1.90E-94 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02576 - - csv:101218630 1380.93