Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02599 ATGGATTCTAAAAGAATTTCAAATGCTACCATCTTTCTTGTCCTAAATCTTGTGTTTTTTGCCTTTGTTAATGTATGCCACGCCTGCAACGATCCAAAGCCAAAGCCGACTCCAAAGCCTTACCCTAACCCTACTCCAGTAGTGAAGAGCTGCCCTAGAGATGCCCTAAAGCTTGGGGTGTGCACAAAGCTATTGAACGGACCAGTCAGTGCACTCGTGGGGTCCTTACCAAACACTCAATGCTGCTCGCTTCTCGATGGGCTTATCGACCTTGAAGCTGCGGTGTGTCTTTGCACAGCCATCAAAGCCAATGTTCTTGGTATCAACATTAACATCCCTATTTCTTTGAGCTTGCTTGTCAATGTTTGTGGAAAGAAGGTTCCCTCTGAATTCCAGTGTGCCTAA 405 45.68 MDSKRISNATIFLVLNLVFFAFVNVCHACNDPKPKPTPKPYPNPTPVVKSCPRDALKLGVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLSLLVNVCGKKVPSEFQCA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33137468 33138246 + MELO3C013958.2.1 Cme06g02599 331748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02599 134 CDD HPS_like 48 133 IPR027923 -
Cme06g02599 134 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 7 133 - -
Cme06g02599 134 Pfam Hydrophobic seed protein 51 134 IPR027923 -
Cme06g02599 134 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 53 133 IPR036312 -
Cme06g02599 134 SMART aai_6 51 133 IPR016140 -
Cme06g02599 134 Gene3D - 49 134 IPR036312 -
Cme06g02599 134 PANTHER - 7 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02599 - - - csv:101223145 239.965
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g02599 Cme09g01630 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02585 Cme-Chr6:32859343 Cme06g02599 Cme-Chr6:33137468 8.18E-36 dispersed
Cme06g02599 Cme-Chr6:33137468 Cme09g01627 Cme-Chr9:21012307 1.41E-30 dispersed
Cme09g01633 Cme-Chr9:21065351 Cme06g02599 Cme-Chr6:33137468 9.40E-25 dispersed
Cme06g02599 Cme-Chr6:33137468 Cme09g01624 Cme-Chr9:20999892 1.25E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g515 . . . . Bpe05g00586 . . . . . . Cma15g01138 . . Sed01g4008 . . Bhi11g00209 Tan01g2014 Cmetu09g0055 . . Mch10g1543 . Cla10g00273 Cam10g0282 Cec10g0290 Cco10g0287 Clacu10g0284 Cmu10g1124 Cre10g0532 . . Cone6ag0687 . Lsi07g01317 Csa05g00408 Chy09g01104 Cme06g02599 . . . . . . . . . . Cmo15g01197 . . . . . . Bhi12g00426 . . . . . Lcy12g1811 Cla01g00382 Cam01g0399 Cec01g0391 Cco01g0412 . . Cre09g2128 Lsi09g00412 Csa03g00295 . Cme09g01630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266