Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02601 ATGCGGGTCAAGGAGATGCACCCTCTCTGTTGCATCACTCTGGAGAATTTCAGTGGCGGAATCGGTGACCAGTCACCAGAGGAAGCCACGTCGTTGTCCCGGAGTAGAAGTTTGCCGGTGAGCATTCCGGCATTTTCGAATAATAATAATCCTTTACAGATTTCTGGATCTATAACTAGGGTAGCTGGTGTTCTTTATAAATGGACTAATTACGGCAAAGGATGGAGATCGAGATGGTTTGTGTTGAGAGATGGTGTTTTATCTTACTCCAAAATTAGCCTTATATCTCCTGGTGATGATGATGTTCGATTGATCGGAGAGATTTCGACGAATCGGCTTTCCAGAAGGAAGCGACAGAAAACTGGGGGAATAGTTCATTTGAAGTGCGTCACATCAGCAGGTTTGGGGAAAAAGTATGAGTGTAAAGATCTGACGGTATCACGGTTTCGAGAAAGCAAGTCAGATGACCGGCGGTTTTATATATTCACGGCCACAAAGACACTTCATTTGAGAACAGAATCAAAGAAAGACAGGGTGACCTGGATACAAGCTTTAGCCTCTTCCAGAAGCTTATTTCCATTGCAAATTCTGAATGATAATCTTCCCTTTGTTCCAAATGATTTATCCCTTTCCACTCAGAAACTCAAGAAGCGTTTACTTGAAGAGGGAATCAGTGATGCAGTTGTTAAGGACTGCGAACAAATCATCCTCTCCGAGTTCTCAGAAATGCAAGGACAGTTGAAAGTACTTTTGGAAGAACGATCTTGTTTGATTGATACCTTGAGGGAATTGGAGATTAGGGCAGTCACAGCAGCTAATATAGAAATCGAAGCTAATGGAGTTCACAATGGTGAGTACCAGTTGATGAAACATGATTTTTCCACCGAATGCAGTGGAAAATATAGTGAATGTACTACTACTGAGTCTTCAGATGACGTTGAAAAGCAAGATATCGAAGATGGGTCAGATGCTGATGAAAGTTTCTTCTATGACACTAAGGAAACGTTTTCAGAACTCACTCTTAGCTGTGGGTCAGTAGAAGGGACTTCTGATTCCCTAGATAAGGTTAAGGATCTTGAAAGTCGAAAAGATGATGTAGAGAAGATGCACCACAAACAGAGAATTGAAAATTCTGTTCATTTTAGTGTTCAGAGAAGAAAAAAGCTTCCAGATCCCATTGAGAAAGAGAAACGAGTTAGTCTTTGGTCTATGATAAAGGACAATGTTGGAAAGGATCTTACACGAGTTTGTCTCCCGGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTGTGAGGACATGGAATATTCTCACCTTTTAGACCAAGCATATGAACATGGAAGACAGGGAAACAATTTCCTCAGGGTCCTCAAGGTTGCTGCATTTGCTGTTTCTGGTTATGCTTCCTCTGAAGGACGACATTGTAAACCATTCAACCCTTTGCTTGGGGAAACTTATGAAGCTGACTTTCCTGAGAAAGGAATTCGTTTCTTCTCCGAGAAGGTAAGTCATCACCCGACCGTTATTGCGTGCCATTGTGAAGGCAGAGGATGGAGATTCTGGGGTGACAGCAACCTCCGATCAAAATTTTGGGGACGCTCAATTCAGCTCGACCCTGTTGGAGTTCTTAACCTGGAATTTGATGATGGAGAAGTATTTCAGTGGAGCAAGGTCACCACAAATATTTATAATCTCATTCTCGGAAAAGTATATTGTGATCACCATGGTACAATGCACATACGTGGTAATAGAGAGTATTCTTGCACACTTAAGTTCAAAGAGCCTTCGATTCTTGATCGAAATCCTCATCAGGTTCATGGATTTATTGAAGATGCTAGTGGTCGAAAGGTTGCCACAATATTTGGCAAGTGGGATGAAGGTATGTATTACATGGAAGGCGAGATCAATGGGAACCGAAAGCGCAATAGCCCTCCGAGTGACGAGTTTATGCTGTGGAAAAGTGAAAAACCTGCTCCTGATCTCACTCGTTACAATTTAACTTCATTTGCCATCACTCTTAATGAACTAACACCTGACCTGAAGGAAAGGCTTCCACCCACGGATTCAAGACTTAGACCGGACCAGCGACATTTGGAAAATGGTGAATATGAAAAGGCAAATGAAGAGAAACAACGCTTGGAGAGACGTCAGAGAATTTCCAGGAAATTGCAAGACAATGGATGGAAACCCAGATGGTTTTGTAGGGAAGGTGAAGATGGGCCATACCGATACATGGGTGGCTACTGGGAAGCACGAGAGGAAGGAAACTGGGACAATTGCCCAGATGTATTTGGCGAATTGAACGAGAGCATGGTTGGCGAATAG 2331 42.47 MRVKEMHPLCCITLENFSGGIGDQSPEEATSLSRSRSLPVSIPAFSNNNNPLQISGSITRVAGVLYKWTNYGKGWRSRWFVLRDGVLSYSKISLISPGDDDVRLIGEISTNRLSRRKRQKTGGIVHLKCVTSAGLGKKYECKDLTVSRFRESKSDDRRFYIFTATKTLHLRTESKKDRVTWIQALASSRSLFPLQILNDNLPFVPNDLSLSTQKLKKRLLEEGISDAVVKDCEQIILSEFSEMQGQLKVLLEERSCLIDTLRELEIRAVTAANIEIEANGVHNGEYQLMKHDFSTECSGKYSECTTTESSDDVEKQDIEDGSDADESFFYDTKETFSELTLSCGSVEGTSDSLDKVKDLESRKDDVEKMHHKQRIENSVHFSVQRRKKLPDPIEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDMEYSHLLDQAYEHGRQGNNFLRVLKVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTVIACHCEGRGWRFWGDSNLRSKFWGRSIQLDPVGVLNLEFDDGEVFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNREYSCTLKFKEPSILDRNPHQVHGFIEDASGRKVATIFGKWDEGMYYMEGEINGNRKRNSPPSDEFMLWKSEKPAPDLTRYNLTSFAITLNELTPDLKERLPPTDSRLRPDQRHLENGEYEKANEEKQRLERRQRISRKLQDNGWKPRWFCREGEDGPYRYMGGYWEAREEGNWDNCPDVFGELNESMVGE 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33199558 33207719 - MELO3C013961.2.1 Cme06g02601 331750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02601 776 Gene3D - 697 760 - -
Cme06g02601 776 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 365 - -
Cme06g02601 776 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 377 770 - -
Cme06g02601 776 Coils Coil 247 267 - -
Cme06g02601 776 MobiDBLite consensus disorder prediction 683 713 - -
Cme06g02601 776 SUPERFAMILY Oxysterol-binding protein-like 395 771 IPR037239 -
Cme06g02601 776 ProSiteProfiles PH domain profile. 58 190 IPR001849 -
Cme06g02601 776 SMART PH_update 59 192 IPR001849 -
Cme06g02601 776 Gene3D - 486 651 - -
Cme06g02601 776 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 365 IPR000648 GO:0008289
Cme06g02601 776 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 377 770 IPR000648 GO:0008289
Cme06g02601 776 SUPERFAMILY PH domain-like 61 186 - -
Cme06g02601 776 Pfam Pleckstrin homology domain 63 186 - -
Cme06g02601 776 Pfam Oxysterol-binding protein 400 755 IPR000648 GO:0008289
Cme06g02601 776 Gene3D - 57 191 IPR011993 -
Cme06g02601 776 Coils Coil 356 376 - -
Cme06g02601 776 MobiDBLite consensus disorder prediction 682 713 - -
Cme06g02601 776 Coils Coil 698 728 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02601 K20456 OSBP; oxysterol-binding protein 1 - csv:101213703 1501.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g02601 Cme09g01638 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02601 Cme-Chr6:33199558 Cme10g00607 Cme-Chr10:3884215 0 dispersed
Cme09g00832 Cme-Chr9:10784749 Cme06g02601 Cme-Chr6:33199558 1.92E-62 transposed
Cme11g00874 Cme-Chr11:11683487 Cme06g02601 Cme-Chr6:33199558 1.69E-24 transposed
Cme12g00166 Cme-Chr12:1615961 Cme06g02601 Cme-Chr6:33199558 7.05E-44 transposed
Cme06g02601 Cme-Chr6:33199558 Cme09g01638 Cme-Chr9:21097139 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g511 Blo02g01049 Blo03g00169 Bda06g00037 . Bpe05g00588 Bpe07g00165 . . Cmo06g00789 Cmo16g01114 . Cma15g01141 Car02g01307 Car15g01037 . Cpe14g00881 Cpe05g00242 Bhi11g00212 . . . . . . Cla10g00276 Cam10g0285 Cec10g0293 Cco10g0290 Clacu10g0286 Cmu10g1126 Cre10g0534 . . Cone6ag0690 Cone9ag0692 Lsi07g01319 . . Cme06g02601 . Blo19g00281 Bda07g00005 . . . Bma05g00770 . . . Cmo15g01200 Cma06g00769 Cma16g01066 Car06g00687 Car16g01012 Cpe08g00749 . Bhi12g00421 . . Lac11g2262 Hepe06g1148 . Lcy12g1808 . . . . . . . . Csa03g04675 . Cme09g01638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88