Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02610 ATGCAACACTCCCGCCGCGTGGCAGTGATCGGCGCCGGTGGCGCCGGCCTCATCTCGGCCCGGGAACTTTCCCGGGAGGGCCACCAAGTTGTGGTATTCGAACGGAATAATCAAATCGGAGGGGTCTGGGTATATTCGCCCGAAATTGAATCCGACCCACTTGGACTCGACCCGAATCGGACCCGAATTCATAGCAGCCTCTACAAATCTCTACGAACCAATATACCAAGAGAACTCATGGGGGTCCGGGATTTCCCGTTTGTTCCTCGAGAAGGGGAGGATCGAGATCCGAGGCGATTTCCAAGTCATAAGGAGGTTCTAAAGTATTTGGAAGATTTCGCTAATGAATTTGGGATTTGTAAATTGGTGAGATTTAGAACTGAGGTGGTGTTTGCTGGTATGGAGAAGCTTGGGGAATGGAGGGTTGAATTCCGATGTGAAAATGGGGATGTTGATTATGACATTTTTGATGCTGTAGTTGTTTGTGTTGGGAATTTTTCGCAGCCTCGAATAGCAGAGATTCCCGGGATTGAAGGATGGCCTGGGGAACAAGTTCATAGTCACAATTATCGTGACCCCGAACCATTTCGCGGTAAGGTTGTTGTGTTGATAGGTTATGCTTCGAGTGGTGGGGACATTTCTCAGGAGCTCATTGGGGTTGCCAAAGAAATTCATATTGCTTGCAGATCAGCTAAAACAGAGCCTTTGGACGAAGAATCAATTATTAGTAACGTGTCATTTCATCCAATGATAGAAAGTGTCCGTAAAGATGGAACGGTAGTCTTTCAAGACGGTTGCATCGTTTCGGCTGACGTTATTTTGCATTGTACTGGGTACAAATATAATTTCCCGTTTCTTGAAACCAATGGCACTGTTACGGTGGACGACAACCGTGTAGGACCTCTTTTCAAGCATGTCTTCCCCCCAGCACTGGCCCCAGGGCTTTCCTTCGTTGGATTACCATTTAAGGTTGTTCCTTTTGTCATATCTCAGCTTCAAAGCAATTGGATTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCGAAAGAGGAAATGTTGGCAGATGTTAAAGCTTTTTACGAAGAACTCGAAGCTCTTGGCAAGCCCAAGCATCGGACCCATAAATTGGGTGGTTATATGCCTGCCTACTGTAACTGGCTTGCAGCAACGTGTGGTTGTCCTCCCTATGAAGAATGGAGAAAGGAAATGTTTGTTGCTACTGATGTTAATAGAATGGTCAATCTTGAGTCATACCGTGATGATTGGCACGACGATGAGTTGATTCATCAAGCTTACGAAGAATTTAGCAAGTATACTACGAATGAAATAAGTCAAAACCACTCAAATTAG 1353 45.53 MQHSRRVAVIGAGGAGLISARELSREGHQVVVFERNNQIGGVWVYSPEIESDPLGLDPNRTRIHSSLYKSLRTNIPRELMGVRDFPFVPREGEDRDPRRFPSHKEVLKYLEDFANEFGICKLVRFRTEVVFAGMEKLGEWRVEFRCENGDVDYDIFDAVVVCVGNFSQPRIAEIPGIEGWPGEQVHSHNYRDPEPFRGKVVVLIGYASSGGDISQELIGVAKEIHIACRSAKTEPLDEESIISNVSFHPMIESVRKDGTVVFQDGCIVSADVILHCTGYKYNFPFLETNGTVTVDDNRVGPLFKHVFPPALAPGLSFVGLPFKVVPFVISQLQSNWIAGVLSNRIALPSKEEMLADVKAFYEELEALGKPKHRTHKLGGYMPAYCNWLAATCGCPPYEEWRKEMFVATDVNRMVNLESYRDDWHDDELIHQAYEEFSKYTTNEISQNHSN 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33348635 33352296 + MELO3C013967.2.1 Cme06g02610 331759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02610 450 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 3 440 - -
Cme06g02610 450 PIRSF FMO 231 400 IPR000960 GO:0050660|GO:0050661
Cme06g02610 450 PIRSF FMO 3 233 IPR000960 GO:0050660|GO:0050661
Cme06g02610 450 Gene3D - 6 423 IPR036188 -
Cme06g02610 450 SUPERFAMILY FAD/NAD(P)-binding domain 3 234 IPR036188 -
Cme06g02610 450 SUPERFAMILY FAD/NAD(P)-binding domain 250 427 IPR036188 -
Cme06g02610 450 Gene3D - 173 276 IPR036188 -
Cme06g02610 450 PANTHER DIMETHYLANILINE MONOOXYGENASE 3 440 - -
Cme06g02610 450 Pfam Flavin-binding monooxygenase-like 5 230 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cme06g02610 450 Pfam Flavin-binding monooxygenase-like 240 390 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cme06g02610 450 PRINTS Flavin-containing monooxygenase (FMO) signature 5 21 IPR000960 GO:0050660|GO:0050661
Cme06g02610 450 PRINTS Flavin-containing monooxygenase (FMO) signature 29 53 IPR000960 GO:0050660|GO:0050661
Cme06g02610 450 PRINTS Flavin-containing monooxygenase (FMO) signature 185 199 IPR000960 GO:0050660|GO:0050661
Cme06g02610 450 PRINTS Flavin-containing monooxygenase (FMO) signature 212 227 IPR000960 GO:0050660|GO:0050661
Cme06g02610 450 PRINTS Flavin-containing monooxygenase (FMO) signature 263 290 IPR000960 GO:0050660|GO:0050661
Cme06g02610 450 PRINTS Flavin-containing monooxygenase (FMO) signature 328 341 IPR000960 GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02610 - - - csv:101220318 860.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01120 Cme-Chr6:8511897 Cme06g02610 Cme-Chr6:33348635 1.59E-06 dispersed
Cme06g02605 Cme-Chr6:33313743 Cme06g02610 Cme-Chr6:33348635 0 dispersed
Cme06g02606 Cme-Chr6:33318430 Cme06g02610 Cme-Chr6:33348635 0 dispersed
Cme06g02610 Cme-Chr6:33348635 Cme12g01966 Cme-Chr12:25518334 6.71E-131 dispersed
Cme06g02609 Cme-Chr6:33344745 Cme06g02610 Cme-Chr6:33348635 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g504 . . . . . . . . Cmo06g00787 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01326 . . Cme06g02610 . . . . . . . . . . . Cma06g00767 . . Car16g01008 . . . . . . . . . . . . . . . . . . Chy06g02021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58