Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02625 ATGATATCGTTCGTTAGATTTCGGAATTTATCCTACAAATTCCGAAACGAAACTGATTTAGTTAGACGTTTTCATTCCGGAACGAATCCAAAATCCAATTCTCCAGATTCTTCCTACTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACCAAGCTGCTGTTAAGCTTAAGACTGCAGCAGCTTCCTTCGGCGCGGTTCGTTATATGGTGGCGTATGCGAATCGGCATGCGTTTAGCTACGTGCCGCAAGTTGTTAGAGAGCGGAAACGAGAGAGGAAGATGCTTAATCAATTGGAGAGAAAAGGTGTGATTAAATCGATTGAACCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATATGTACGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAGGGGTAGTAGAAGAGTGAAGTTGATAGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCTGAAGTGGGATATGGTTTAGCTGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAATGACATGGTTGAGATTATGGATAGGAGAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGAATGTTTTGAAGGAAGCTAAGTTAAGATGTCTCAGGACAGTTGTTGTAGGGGATTTGAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTTTCTGTTGTGGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACGTACAATCCTCAGTTGGAGAAGGAAGTGTCTGGTTTAGATGATGATATAGGCGAGGAAGACAATGTTGAAGAAGGTTCTGTTGATGGGGGACTTTGTGAGATTATGCAAAATAATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGACGCTGAAACTGATACTGTTTCATCACCATCATGGAAATGA 1107 41.28 MISFVRFRNLSYKFRNETDLVRRFHSGTNPKSNSPDSSYSTVAIFWDLDNKPPKSLPPYQAAVKLKTAAASFGAVRYMVAYANRHAFSYVPQVVRERKRERKMLNQLERKGVIKSIEPYLCRVCGRNFYMYEKLVNHFKQIHESEHKKRLNQIESARGSRRVKLIAKYSMKIQKYKNAARDVLTPEVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKEVSGLDDDIGEEDNVEEGSVDGGLCEIMQNNDRGAWWDLSSDAETDTVSSPSWK 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33460565 33462059 - MELO3C013980.2.1 Cme06g02625 331774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02625 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Cme06g02625 368 Pfam NYN domain 189 271 IPR021139 GO:0004540
Cme06g02625 368 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
Cme06g02625 368 PANTHER - 16 361 - -
Cme06g02625 368 SUPERFAMILY beta-beta-alpha zinc fingers 117 145 IPR036236 -
Cme06g02625 368 Coils Coil 90 110 - -
Cme06g02625 368 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 16 361 - -
Cme06g02625 368 Gene3D - 33 279 - -
Cme06g02625 368 CDD PIN_LabA-like 131 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02625 Cme-Chr6:33460565 Cme07g00328 Cme-Chr7:2092105 7.95E-71 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02625 - - csv:101211196 700.664