Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02647 ATGAGAAAGGTTAATCAGCTTTGTCTTTCTCATGCTCTTCTGTGCTTCATTCTATGTCTCGTTGGATTTTGCTCTGCTGTCACCGAGAAGGACATTTTGCTTCAATTCAAAGATGCTGTTACAGAGGACCCGTTTAATTTCTTGAGAACTTGGGTTGCCGGCGAGGATCATTGCCGGAGTTTCAACGGCGTGTTCTGTAACTCCGATGGGTTTGTGGAAAGGATTGTTTTATGGAACTCTAGCTTGGCTGGAACTTTGTCGCCTTCCTTGTCGGGATTGAAGTTCTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGTAATATTCCGATCGAATACGGCGCCATTGTTACACTATGGAAGTTGAACTTGAGCTCCAATGCGTTTTCGGGTTTGGTGCCAGAGTTCATCGGCGATTTGCCGAGCATTCGGTTTCTGGATTTGTCTAGAAATGGCTTTACTGGGGAGATTCCTTCAGCTGTGTTCAAGAATTGTTTTAAAACTAGATTTGTTTCATTTTCTCATAATAGATTTTCAGGTGGGATACCTTCAACAATTTTGAATTGTTTGAGCCTTGAAGGCTTTGATTTCTCTAATAATGATCTAAGTGGGAGCATTCCTTTGCAACTCTGTGCCATTCAAAGATTAGAGTATGTTTCCGTGAGAAGCAATGCACTATCTGGGAGTGTCCAAGGGCAGTTCTCTTCTTGCCAGAGTTTGAAACTTGTGGATCTGAGTAGCAATATGTTCACCGGGTCACCGCCGTTTGAGGTTCTCGGATTCCAAAACATCACTTATTTTAATGTCTCATATAACAGGTTTAGTGGGGGAATTGCAGAGGTGGTGAGTTGCAGCAATAATCTCGAAGTTCTTGATGTTTCAGGAAATGGTTTGAATGGAGAGATCCCTTTAAGCATTACAAAGTGTGGGAGTCTTAAAATATTGGATTTTGAATCTAACAAGTTGGTTGGGAAGATCCCTGCTGAACTAGCAAATTTGAACAAGCTTTTGGTGCTTCGGTTGGGTTATAATTCGATCACCGGGACAATTCCAGCCATTTTTGGGAACATCGAGCTACTTCAGGTTTTGAATTTGCACAGCCTCAATCTTGTTGGAGAGATTCCTAATGACATAACGAGTTGTAGGTTTCTTCTTGAGTTGGATGTTTCTGGTAATGCATTGGAAGGTGAGATTCCTCAATCTCTTTACAACATGACATACCTTGAAATCCTTGATTTACACGATAACCATCTGAACGGAAGCATTCCATCGACGCTTGGGAGCCTCTTGAAACTGCGGTTTCTGGATCTATCTCAAAACCTGCTGTCTGGTCCGATACCTCGTACTCTTGAAAATCTCACGTTGCTGCACCATTTCAATGTCTCTTTCAATAACCTTTCAGGCCCCATACCTTCCGTAAATACGATCCAAAATTTCGGGCCTTCTGCATTCTCAAACAATCCTTTTCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCAGGTAACACCCCTGGCACGATTTCCACGTCGAAGAAACCAAAGGTTCTTAGTCTATCTGCAATCATTGCAATCATAGCAGCAGTTGTGATCCTGGTCGGGGTATGCGTGATCTCCATTTTGAACCTAATGGCTCGGACGAGGAAGGCAAGGAGCACCGAAATCATTGAGAGTACACCGCTTGGTTCAACCGATTCAGGCGTCATAATTGGGAAACTGGTTCTTTTCAGCAAAACTTTGCCTTCCAAGTATGAAGACTGGGAGGCTGGCACCAAAGCATTGCTTGACAAGGAATGCCTAATAGGGGGTGGCTCGATCGGCACCGTCTACAGAACAAGTTTTGAGGGCGGCATCTCCATTGCTGTGAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGTCAAGATGAGTTCGAGACTGAAATCGGACGTTTAGGAAACATCAAACACCCAAACTTAGTCGCTTTCCAGGGCTACTATTGGTCGTCATCAATGCAGTTGATTCTATCCGAATTCGTCACGAACGGCAATTTGTACGACAATCTACATAGTCTGAATTATCCAGGCACCAGCACAGGCATTGGCAATGCGGAGTTACATTGGTCTAGAAGATATAAAATTGCACTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGACCTCCAATTCTTCACCTCAACATAAAATCAACTAACATACTGTTAGATGAAAACTACGAAGCCAAGTTATCCGATTACGGGTTGGGGAAGTTGCTTCCAGTTTTGGACAATTATATCTTAACAAAGTACCATAGTGCCGTAGGGTACGTTGCACCAGAGTTAGCACAAAGTTTGAGAGCTAGTGAAAAGTGCGATGTGTATAGTTTCGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAATCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCTGCTTCTGACTGTTTCGATCGTAACTTACGTGGCATTGCTGAAAACGAGCTCATCCAAGTGATGAAGTTAGGATTGATTTGTACATCTGAGATCCCTTCAAAGAGACCAAGCATGGCTGAGGTTGTTCAAGTTCTTGAGTCGATACGAAATGGATTAGGATCATAG 2649 43.22 MRKVNQLCLSHALLCFILCLVGFCSAVTEKDILLQFKDAVTEDPFNFLRTWVAGEDHCRSFNGVFCNSDGFVERIVLWNSSLAGTLSPSLSGLKFLRTLTLYGNRFTGNIPIEYGAIVTLWKLNLSSNAFSGLVPEFIGDLPSIRFLDLSRNGFTGEIPSAVFKNCFKTRFVSFSHNRFSGGIPSTILNCLSLEGFDFSNNDLSGSIPLQLCAIQRLEYVSVRSNALSGSVQGQFSSCQSLKLVDLSSNMFTGSPPFEVLGFQNITYFNVSYNRFSGGIAEVVSCSNNLEVLDVSGNGLNGEIPLSITKCGSLKILDFESNKLVGKIPAELANLNKLLVLRLGYNSITGTIPAIFGNIELLQVLNLHSLNLVGEIPNDITSCRFLLELDVSGNALEGEIPQSLYNMTYLEILDLHDNHLNGSIPSTLGSLLKLRFLDLSQNLLSGPIPRTLENLTLLHHFNVSFNNLSGPIPSVNTIQNFGPSAFSNNPFLCGAPLDPCSAGNTPGTISTSKKPKVLSLSAIIAIIAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYRTSFEGGISIAVKKLETLGRIRSQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVTNGNLYDNLHSLNYPGTSTGIGNAELHWSRRYKIALGTARALAYLHHDCRPPILHLNIKSTNILLDENYEAKLSDYGLGKLLPVLDNYILTKYHSAVGYVAPELAQSLRASEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33635002 33639014 + MELO3C014002.2.1 Cme06g02647 331796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02647 882 Pfam Protein kinase domain 599 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02647 882 SUPERFAMILY L domain-like 261 498 - -
Cme06g02647 882 ProSiteProfiles Protein kinase domain profile. 595 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02647 882 Gene3D Ribonuclease Inhibitor 184 283 IPR032675 -
Cme06g02647 882 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Cme06g02647 882 Gene3D Ribonuclease Inhibitor 284 379 IPR032675 -
Cme06g02647 882 SUPERFAMILY Protein kinase-like (PK-like) 596 874 IPR011009 -
Cme06g02647 882 Gene3D Transferase(Phosphotransferase) domain 1 672 880 - -
Cme06g02647 882 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Cme06g02647 882 Gene3D Ribonuclease Inhibitor 383 500 IPR032675 -
Cme06g02647 882 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515
Cme06g02647 882 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515
Cme06g02647 882 PANTHER - 6 879 - -
Cme06g02647 882 Gene3D Phosphorylase Kinase; domain 1 571 671 - -
Cme06g02647 882 CDD STKc_IRAK 601 876 - -
Cme06g02647 882 SUPERFAMILY L domain-like 28 279 - -
Cme06g02647 882 PANTHER UNNAMED PRODUCT 6 879 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02647 Cme-Chr6:33635002 Cme07g01878 Cme-Chr7:24153193 2.18E-157 dispersed
Cme06g02647 Cme-Chr6:33635002 Cme05g00654 Cme-Chr5:7055603 2.29E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64983 PF00069 Pkinase 6.10E-35 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02647 - - csv:101212415 1679.07