Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02660 ATGGCTTCCCAGGTCCCTCGTTGGAGTCTTGTCGCCATCATCTTTTTCTTGTCGTTTACAATGCCGGAGATGACAACTAAATCAGTGCTCGCCATCTTCCGACCAAGTCCTTGGAAGCTCGCCCATGCCACCTTCTATGGGGATGAGACTGCATCTGAGACAATGGGAGGAGCTTGTGGTTATGGAAACTTGTTCACAAATGGGTATGGCGTTGATACGGTGGCTCTAAGCTCTACACTCTTCAACAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGTGCTCAATCCAAAGCTTGTTACCGTAATGTTGCTTTCACGACGGTGACTGCAACCAACCTTTGCCCGCCAAATTGGGCTAAACCTTCGGACAACGGCGGATGGTGCAACCCTCCGAGGGTTCACTTCGACATGTCGAAGCCAGCGTTTATGAAGATCGCCAATTGGAAGGCTGGGATCATCCCTGTCGTGTACCGACGTGTCCCGTGCGGTAAAAAAGGCGGCCTTCGGTTCACATTACAAGGAAATGGCTACTGGCTTTTGGCGTACGTGATGAACGTCGGTGGCGGCGGCGACGTGTCGGGAATGTGGGTGAAAGGGAGCAAAACAGGTTGGATCAAAATGAGCCATAACTGGGGAGCTTCATATCAAGCATTTTCAACTTTGGTTGGCCAATCTTTGTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCACAGCTTGGAACGTTGCTCCTTCTAGTTGGAGGTTTGGTTTGACCTACAACGCCAACATCAACTTTCGTTGA 795 49.18 MASQVPRWSLVAIIFFLSFTMPEMTTKSVLAIFRPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCAQSKACYRNVAFTTVTATNLCPPNWAKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVVYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETITAWNVAPSSWRFGLTYNANINFR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33714951 33716330 - MELO3C014013.2.1 Cme06g02660 331809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02660 264 PANTHER EXPANSIN-A15 7 264 IPR002963 GO:0009664
Cme06g02660 264 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Cme06g02660 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Cme06g02660 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Cme06g02660 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Cme06g02660 264 Gene3D - 22 164 IPR036908 -
Cme06g02660 264 SUPERFAMILY Barwin-like endoglucanases 29 187 IPR036908 -
Cme06g02660 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Cme06g02660 264 Gene3D - 165 264 IPR036749 -
Cme06g02660 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Cme06g02660 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Cme06g02660 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Cme06g02660 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Cme06g02660 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Cme06g02660 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Cme06g02660 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Cme06g02660 264 SMART dpbb_1 73 159 IPR007112 -
Cme06g02660 264 PANTHER EXPANSIN-A7 7 264 - -
Cme06g02660 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Cme06g02660 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Cme06g02660 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Cme06g02660 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Cme06g02660 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Cme06g02660 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g02660 Cme09g01702 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02660 Cme-Chr6:33714951 Cme08g02411 Cme-Chr8:30997262 1.41E-96 dispersed
Cme06g02660 Cme-Chr6:33714951 Cme09g01702 Cme-Chr9:21654358 3.17E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02660 - - csv:101207770 540.036