Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g02668 | ATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCATGGGTGGAGAAGTACAGGCCCAACAAGGTCACTGACATTGTGGGCAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGAAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGACGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATCCTTGGGCGCCTCATGGTGGTGATTCAGGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTAAATAATTTGCAAGCTACATATAGTGGATTCCGCTTTGTAAACCAGGATAATGTTTTCAAGGTTTGTGATCAACCGCATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGACGATGCTTGTGCTGGCCTGAAGCAACTCTACGACTTAGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCTGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTCGGTTCTTACCTTCAGCTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGA | 996 | 43.98 | MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 33778714 | 33786031 | - | MELO3C014020.2.1 | Cme06g02668 | 331817 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g02668 | 331 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 234 | 325 | IPR008921 | GO:0003677|GO:0006260 | |
Cme06g02668 | 331 | Pfam | Replication factor C C-terminal domain | 235 | 320 | IPR013748 | - | |
Cme06g02668 | 331 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 6 | 329 | - | - | |
Cme06g02668 | 331 | CDD | HLD_clamp_RFC | 170 | 232 | - | - | |
Cme06g02668 | 331 | Pfam | ATPase family associated with various cellular activities (AAA) | 49 | 167 | IPR003959 | GO:0005524|GO:0016887 | |
Cme06g02668 | 331 | Gene3D | - | 171 | 234 | - | - | |
Cme06g02668 | 331 | CDD | AAA | 28 | 165 | - | - | |
Cme06g02668 | 331 | Gene3D | - | 235 | 327 | - | - | |
Cme06g02668 | 331 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 11 | 233 | IPR027417 | - | |
Cme06g02668 | 331 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 6 | 329 | - | - | |
Cme06g02668 | 331 | Gene3D | - | 7 | 170 | IPR027417 | - | |
Cme06g02668 | 331 | SMART | AAA_5 | 45 | 177 | IPR003593 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g00527 | Cme-Chr3:7925750 | Cme06g02668 | Cme-Chr6:33778714 | 1.30E-53 | dispersed | |
Cme06g02668 | Cme-Chr6:33778714 | Cme07g00817 | Cme-Chr7:7770374 | 4.35E-53 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g02668 | K10755 | - | csv:101208984 | 654.055 |