Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02670 ATGGCATCTTCAAGGTCCCCGAATGGATCTTCAGACGATATTCTCGATACCTCCCCTTTGATGGGGACTCCGAATCGGTCGTTGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAGAGTTTGCGTCAGGCGGCGAGGTTTCTTAGGCAAGCTAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTAAGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTTATCCTTGATATCGTTTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCATCTTGGTTCTCAGCCGTAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGTATTCTTCATATGGTGTGCGTTTGTGTTGAGTATCGTCGTCGCCGACAGCTACGATATTCGGCCTTTAATTCGATGGATGAGGGAAATTCTGCACGCGCGATTTCGGGATTGGGGTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGAGAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACAGGCCTCTCCCCTACTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCGGACCAGGAAGGAGCAACCAAAGAAGATGTCGAACAGCTGTCAAAATTTAAATTCAGAAAGGTTGAAAATGCCGAGAAATTCTCCTCCGATGTACAGGAACCTCTTGGTGGGATAATGTCTGAGTGTTGTACAGATTCACCCATTGAACGCCCCCTCTTGCAAGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATACGAGGATGGCGTTGAGCTACGAGAGCTCCCATGTGGTCATCACTTCCACTGTGCGTGCGTCGATAAATGGCTGTATATTAATGCCACCTGTCCTCTCTGCAAGTTCAACATCTTGAAAAATAGCAATCTTGCTCAAGAAGAAGTTTGA 1152 46.79 MASSRSPNGSSDDILDTSPLMGTPNRSLDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATILVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSAFNSMDEGNSARAISGLGSRANSSHYVSLAQLDENDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAQASPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVENAEKFSSDVQEPLGGIMSECCTDSPIERPLLQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKFNILKNSNLAQEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33787738 33793972 + MELO3C014022.2.1 Cme06g02670 331819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02670 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 375 IPR013083 -
Cme06g02670 383 CDD RING-H2_RNF111_like 327 371 - -
Cme06g02670 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Cme06g02670 383 PANTHER TARGET OF ERK KINASE MPK-1 6 383 - -
Cme06g02670 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 383 - -
Cme06g02670 383 SMART ring_2 328 368 IPR001841 -
Cme06g02670 383 MobiDBLite consensus disorder prediction 1 28 - -
Cme06g02670 383 Pfam Ring finger domain 327 369 IPR001841 -
Cme06g02670 383 SUPERFAMILY RING/U-box 319 375 - -
Cme06g02670 383 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01669 Cme-Chr3:25438904 Cme06g02670 Cme-Chr6:33787738 1.84E-44 dispersed
Cme06g00207 Cme-Chr6:1261143 Cme06g02670 Cme-Chr6:33787738 1.68E-118 dispersed
Cme06g02670 Cme-Chr6:33787738 Cme09g01316 Cme-Chr9:18235751 1.87E-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02670 - - csv:101209228 751.125