Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02676 ATGTCATCAAAAAAAAAACGAAAAATTTTTCATTTCCCCTTTCCATTTATATCCCTTCCAACCCAACAAAAAAACAAAAAACAAAAAACAAAAAATCCACACACACCATTTTTAAATTTTTGGTTCATAATAATAATGCTTATGGACCCTTCTTTCAATTCCTCTCATCAAGAACATCAACAAGAACAAGAACAACAGGAAGATCATTGTTTACAAATGCGTCAATTACTTATCCGTTGTGCTCATTTCATTTCTCAATCTGATTTCATTTCAGCTCACCATCTTCTTTCAATTCTCTCTTCAAATTCCTCTCCTTATGGTGATTCAACTCAAAGATTACTCCATTATTTCTCTTCTTCTCTTTCTCATCTTCTCCCTTCATCAAATTATAGTTCATCTTTTCATCATCACCATCATCATCATCATGATATTGAAAAGATTCAATCTTGTTACTTATCATTGAATCAAATCACACCCTTTATTAGATTCACTCATTTAACTGCAAATCAAGCCATTTTAGAAGGTATTGAAGAAAGTGGTATGATTCATGTTTTGGATTTTGATATTATGCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGATCGTTTTCCATCTCCTATGCTTCGTATTACTGCCACTGGTCTTGATCTTAATTTCCTTCATAAGACTGGTGATAGACTCTCAAAATTTGCTCAATCACTTGGTTTGAGGTTTCAGTTTCACCCTTTGCTTCTTCTTCATGATCGTGATCATCATCGCGTTATCCCTGCTGCTCTTACCCTCTTCCCCGATGAAGCTCTCGCCGTTAACTGCGTTCTCTACTTGCACAGGTTAATGAAGGACGAGGTTCGAGCATTGCTTAATAAAATCAAGGCTTTGAATCCAAAAGTGGTGACAATAGCAGAAAAGGAAGCAAATTTCAACCATCCATTATTCATGCAAAGATTTGTAGAGGCATTGAATCATTACACTTCAATATTTGATTCATTAGAAGCAACTTTGCCTCCAAATAGTAGGGAGAGATTGGCAGTGGAGCAAGTTTGGTTTGGGAGGGAAATAAACGACATCGTTTCAGGAGAAGCGAATAAGAAAAAACAGCACTATGCTGAAAGGTTAATGACAATGACTAATGAGGCATATTAG 1152 35.94 MSSKKKRKIFHFPFPFISLPTQQKNKKQKTKNPHTPFLNFWFIIIMLMDPSFNSSHQEHQQEQEQQEDHCLQMRQLLIRCAHFISQSDFISAHHLLSILSSNSSPYGDSTQRLLHYFSSSLSHLLPSSNYSSSFHHHHHHHHDIEKIQSCYLSLNQITPFIRFTHLTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADRFPSPMLRITATGLDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLHDRDHHRVIPAALTLFPDEALAVNCVLYLHRLMKDEVRALLNKIKALNPKVVTIAEKEANFNHPLFMQRFVEALNHYTSIFDSLEATLPPNSRERLAVEQVWFGREINDIVSGEANKKKQHYAERLMTMTNEAY 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33880211 33882954 - MELO3C014029.2.1 Cme06g02676 331825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02676 383 PANTHER SCARECROW-LIKE PROTEIN 18 58 375 IPR030017 GO:0005634|GO:0010223
Cme06g02676 383 ProSiteProfiles GRAS family profile. 64 383 IPR005202 -
Cme06g02676 383 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 58 375 IPR005202 -
Cme06g02676 383 Pfam GRAS domain family 73 370 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02676 - - - csv:101213853 554.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02676 Cme-Chr6:33880211 Cme03g00100 Cme-Chr3:1431480 3.87E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g799 . . . . . . . . Cmo16g01054 . . . . . . . . . . . . . . . Cla10g00339 Cam10g0352 Cec10g0366 Cco10g0360 Clacu10g0353 Cmu10g1189 Cre10g0600 . . . . . Csa03g00359 . Cme06g02676 . Blo10g00896 . . . . . . Sed08g2851 . . . . . . Cpe14g00831 . Bhi11g00376 Tan01g1930 Cmetu06g2650 . Hepe06g1220 Mch10g1457 . . . . . . . . . . Chy06g01964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008597 1 1 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41568 PF03514 GRAS 8.00E-93 CL0063 Cme TF