Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02677 ATGGGTTCTTGTCATTCGTCTCCTAAAAGGCGGCAGAGCAGAGGTGGGGTTTATTCTGCCGCCGCAGCGCCGGGAGAGGCTCCGACTGTTTCTACAACAGAGTCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTTGTACTCGACGAAGCCGCGTTGGTGGAAGAAGAATTCGACTAAAACTTTTGGGGTTGCTGTTTGTTCAGAGAAGGTCCATGAATTCGAGGTTCCGGGGAGGATTTGTTCAAATGGGTCATCGAGAATTGCTTGTTTGTATACGCAGCAGGGGAAGAAAGGGGTTAATCAAGACGCCATGATTGTGCAGGAGAATTTCAGTTCAAAAAGAGATACAGTATTTTGTGGGGTATTTGATGGACACGGTCCTTTTGGACATATGGTTGCGAAAAAAGTTCGTGATACCCTCCCTCTAATCCTCTGTACACAATGGACATCTAAATCAAATGAAGATCAAAGCAACCTCTTTAAAACGAGACATTCCCGAAGTTCAAATTCTGAAGATTCTGTTGCTCTAGATGGAGATGAAGATTCTTACAAGTCATTGGAGGGCGAAGAAAATGAAAAATTCCCCAAGATGTTTCTACCACTCAAAGTATCTCTACTGAAGTCCTTCAAATTGATGGATAAAGAGTTGAAACTGCATCCCAAAATTGATTGTTTTTGCAGTGGATCTACGGCTGTGACTCTAATAAAGCAGGGTCAGAACCTCATACTTGGAAATGTTGGTGACTCGAGAGCAGTGCTGGCTACAATAGATGAAGATAACTCTTTGATTCCAATTCAATTAACGGTGGACTTGAAACCTGACCTTCCTGGTGAAGCTGCTAGGATCCAGCAATGCAAAGGAAGGGTCTTTGCTTTGCAGGATGAGCCCGAGGTTGCACGAGTCTGGTTGCCAAATAACGATTCGCCTGGTTTGGCGATGGCAAGAGCTTTTGGAGACTTTTGTCTGAAGGATTTCGGTCTTATTTCTGTTCCCGATGTTTATTATCGTCACCTTACCGCAAGAGATCAGTTTGTAATTCTTGCCACTGACGGGGTATATTTTTTCTTCTTTCAACACTTTTCTGATCAAGCTTTAAAGAGTCTTCTAATTTTTCATATTTGTAGTTTTCTATTTGTATGGAGGAAGGGTGCGTTTTCTTCTCACTAG 1173 42.46 MGSCHSSPKRRQSRGGVYSAAAAPGEAPTVSTTESFSSSSSSSSSFLYSTKPRWWKKNSTKTFGVAVCSEKVHEFEVPGRICSNGSSRIACLYTQQGKKGVNQDAMIVQENFSSKRDTVFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSNEDQSNLFKTRHSRSSNSEDSVALDGDEDSYKSLEGEENEKFPKMFLPLKVSLLKSFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQNLILGNVGDSRAVLATIDEDNSLIPIQLTVDLKPDLPGEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVILATDGVYFFFFQHFSDQALKSLLIFHICSFLFVWRKGAFSSH 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33897738 33906050 - MELO3C014031.2.1 Cme06g02677 331826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02677 390 PANTHER ALPHABET, ISOFORM E-RELATED 1 355 - -
Cme06g02677 390 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 1 355 - -
Cme06g02677 390 Pfam Protein phosphatase 2C 103 355 IPR001932 -
Cme06g02677 390 MobiDBLite consensus disorder prediction 26 47 - -
Cme06g02677 390 Gene3D - 82 371 IPR036457 -
Cme06g02677 390 MobiDBLite consensus disorder prediction 1 47 - -
Cme06g02677 390 SUPERFAMILY PP2C-like 83 358 IPR036457 -
Cme06g02677 390 MobiDBLite consensus disorder prediction 158 189 - -
Cme06g02677 390 SMART PP2C_4 78 381 IPR001932 -
Cme06g02677 390 CDD PP2Cc 88 377 IPR001932 -
Cme06g02677 390 ProSiteProfiles PPM-type phosphatase domain profile. 89 390 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00950 Cme-Chr5:13176826 Cme06g02677 Cme-Chr6:33897738 2.42E-126 dispersed
Cme06g02677 Cme-Chr6:33897738 Cme08g02161 Cme-Chr8:27634172 1.10E-84 dispersed
Cme06g02677 Cme-Chr6:33897738 Cme05g01581 Cme-Chr5:25027632 1.28E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02677 - - cmo:103490977 693.73