Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02680 ATGGTATCTTCCCCCAAATTGCAAAGGAAGAAACTGCGGAAAATTTTTGAGAGAGACATGAAACTTCCCCCTTTGGCAGAGCTTGAAACTTCAAGAAATTTCGTTTCTGGGTTTGTGTGCTTGCTTTCTGTGAAGTGTTACATTCATCTAGCTCCTATCAACTTTTGTTGGCTGTATAGCATGTTGATCATGGTGTTTCGAGGTGCTGAACTGGCTTGGGTGGGAGAAGAAGTTGTGATGATCCATATGGAAGATGAACAGGATGGCGAGCTACCAATTCCATCTGGTCGCCTTACTGGCATAAACTTTAGTGTCTCAAATCAGCAAGATATAGAGAATATAGCAGTAATAACAGTTGATGCAGCCAGTGAGGTATCTGATCCTAAGTTGGGACTTCCAAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCTCTAAAATTTTGTGAAGGTCATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCACAAGTGTTGAATAAAGTTTGTCCAGGATGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTTGAGGATCCAACATCTGATTATAATCGACCTAAGGGTTGCCGATATTGTTTTGGAAGTTTAAAGGATTGGTATCCACCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTCGCTAAAGGAGGTTTGCCTTCAGATTATTGGGATTTTATCCCTAAAGATGAACAACAGGAAGAAAGTTACTGTAGACCAAACCGGAAAATCCTAACTCATGCTCAGGTTCATTATTTGTTGAAAGACATCGACCCAAAGTTTCTTAAAAAGTTTGTACCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCGAACAGTCATCGTGTGACTGAAATGGCACATTCATTTTCAAATGGACAGCGTTTGATCTTTGATGAAAGGACCAGGGCTTACAAGAAGGTGGTTGATTTTAGAGGGACAGCCAACGAGTTAGGTTCTCGTGTTCTCGATTGTCTCAAAATTTCGAAGGCAATTTACAAGATCTTCGTCTTTTGCCTTAATCATCTTAGCCCAGAGAAGTTACAAAGTAAAGATTTGGTTTACCAGCAAAAAAAAATTAAGGATACTGCTACTAGTTCATCTGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGATCACTGTTTCCGCATGGTTGTCGTTGGTGATCCAAACATTGAGTTAAGTGAAATTGGCATACCTTGTCATGTTGCAGAGAGATTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTATGTTCGTCGTGAAGGTCGTCTGGTTCGTGTACGTAATGTTCTTGAACTTAACATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTAGTTAATCGACCTCCATCCATACATCAACACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCTGCAGTTCTTTCCTTAAACCCACTCTGTTGTTCTCCTTTCCGTGGAGATTTTGACGGTGACTGCCTTCATGGTTATGTTCCTCAATCGTTGGAAGCCCGAGTTGAGGTTAGAGAGCTGGTTTCCCTAGATAGGCAGTTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTCTGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCACTTTACATCAGTTGTTGCCTCCAGCAATTGTGAAATCCCCTTTGCTTAGAAATTGTGCTTGGACTGGGAAACAGTTATTCAGCATCCTCCTACCTCCTGATTTTGAATATTCTTCTCCTTCTCACAATGTTTTCATTGAGAAGGGAGAATTAATATCTTCAGAAGGATCTTACTGGCTTCGAGACAGTGGTAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAGGGCAAGACCCTTGATTACTTGCGTGATGCTCAAGGGGTTCTTTGTGAATGGTTATCGATGAGGGGCTTGAGCGTTTCATTGTCAGACTTGTACCTCTCTGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATTCACATAAAGAGATCCTTACTGGAAATGACGAAGATAATCAACACTTGTTATCTATTGCAGTGGAGCATTTAATTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTCCGGGATATACAAAATCTAGTTCACAAGTATTCTGGTAAAGACAATTCACTTCTTACTATGTTCAAGGCTGGAAGCAAGGGTAATTTGATGAAACTAGTTCAACATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCGCATAAGCTCTCATGTTCTGCATGGAACAGTCAGAAGATGCCTCGTTATATTCAGGAGGATGGTCTTCCTGACCGTACACAGTCTTTCATACCCTATGCTGTGGTGGAAAATTCCTTTCTCTCGGGGCTTAATCCATTTGAGTGTTTTGCTCATTCTGTGACAAATCGGGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGGACTTTGACACGAAAACTTACGTTTTTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAATTTTGTTATGATATTGATAGACCTACTAGTGTTTCTAGTGAATCGGATAGTGAGAATAATAGAGATCGTGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCTTGTGCTTTCTCAGAAGCTGCATATAGTGCTTTGGACCAACCAATTAGTCTACTTGAAGCTTCGCCGTTACTAAACCTAAAGCGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACCTTTTCATTGTTCTTATCGGAGAAACTTTCAAAACGAAGTTACGGATTTGAGTATGGAGCTCTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAGTGTCATGATAATATGGAGAATGTGGAGAGTGTTTTCTTCTGCAAAGTCAAATTGCTCTGTATCTGTTATTCCCGAGTTTGTCCAGCTAGAAGGCTTTGCTGAGATTGACAGGGTAGACATCACATGGAATGACCGCCCAAAGGTCCCAAAACCTCGTTGTAGTCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTCATTAATAATTGCCTCCCTATAATGGATTTGATTGATTGGACTCGTAGTCATCCAGATAACACTCATAGTCTCTGTTTGGCGTATGGCATAGATTCTGGATGGAAGTACTTTCTCAACAGTTTGGAGTGTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAATTTGTAGGCTTAAATGTGAAAGGACTGACACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCAGTTAGTTATCTAATTGCTAATCTTCATTTGAATCACCATATTGGGCCAGCAGTGAATAGTCCTGGAGCTTGTTTGATTAAAGCTGCCAAGGCTGGAATCAAGGACAATCTGTCAGGAAGTTTAGATGCTTTGGCATGGGGGAGAATGCCTTCACTGGGAACGGGGGGACAGTTCGATATCCTATATTCTGGGAAGGGGCACGAGCTTAATAAGCCTGTTGATGTTTATAATCTACTGGGTGGACAAAGCACTTGTGAGAAGCAGAATGCGAAGATTGAATCTGTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGAGGTTCTACCATTAAAGGACTTAAAAGGCTGGATAGTGTTTCTAAATCAATTTTAAGGAAATTTTTGACGCTGAACGATATTCAAAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTATTCTCTAAATGAAAGGTTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATCGGGATGAAAAGATTGGTGTTGGAGCACAAGACATTAAGGTTGGTAGCCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCGGATGGAACAACAGAAGATTTTTCATACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCTCCTCATAGAGTAAAGGGTTATCAGTCAAAATGGATGCAAGAAAAGCAGAAAAGATCTAGTGGAAGCAGCAAAGAGAAGCTCGTTCAGGCTGGTCTCTTCATAATGTTTCCCCTTTGTAGCACTAACAACACGTGGAATTTTGATGTTGCTCCAACAATAGTGTATTCGGCACAATGGGTCCCAAATACCTATCATCTCTCCCAAGTACCTTATCACTTGATATGTGAGACTCGAGTTTGGATTAGAAGGGTTGATTTTGGAAAGGAGGCGCTGAAGCTAGGCGACGCAATGAGAAAGGCATTTAGCATGCTATCTCGCAATGAGATACGCGCTGAGTATCTAGGCGGTCATGCCCTCACATGTTCGCAAGAAGTGATCTTGGGGCGGAATTCATGA 4836 40.47 MVSSPKLQRKKLRKIFERDMKLPPLAELETSRNFVSGFVCLLSVKCYIHLAPINFCWLYSMLIMVFRGAELAWVGEEVVMIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYKIFVFCLNHLSPEKLQSKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSPSHNVFIEKGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLSIAVEHLIYEKQKSAALNQASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSVSSESDSENNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIWRMWRVFSSAKSNCSVSVIPEFVQLEGFAEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSVSYLIANLHLNHHIGPAVNSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKGYQSKWMQEKQKRSSGSSKEKLVQAGLFIMFPLCSTNNTWNFDVAPTIVYSAQWVPNTYHLSQVPYHLICETRVWIRRVDFGKEALKLGDAMRKAFSMLSRNEIRAEYLGGHALTCSQEVILGRNS 1611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33922016 33939609 - MELO3C014034.2.1 Cme06g02680 331829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02680 1611 Gene3D - 755 907 IPR038120 -
Cme06g02680 1611 Gene3D RNA polymerase Rpb1, domain 3 587 735 IPR042102 -
Cme06g02680 1611 PANTHER DNA-DIRECTED RNA POLYMERASE 83 1087 IPR045867 GO:0003899|GO:0006351
Cme06g02680 1611 Gene3D RNA polymerase ii 453 505 - -
Cme06g02680 1611 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 1107 1384 - -
Cme06g02680 1611 SMART rpolaneu7 308 607 IPR006592 GO:0003677|GO:0003899|GO:0006351
Cme06g02680 1611 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 83 1087 - -
Cme06g02680 1611 PANTHER DNA-DIRECTED RNA POLYMERASE 1107 1384 IPR045867 GO:0003899|GO:0006351
Cme06g02680 1611 Pfam RNA polymerase Rpb1, domain 2 420 578 IPR000722 GO:0003677|GO:0003899|GO:0006351
Cme06g02680 1611 CDD RNAP_IV_RPD1_N 106 954 IPR040403 -
Cme06g02680 1611 Gene3D - 1383 1474 - -
Cme06g02680 1611 Pfam RNA polymerase Rpb1, domain 3 583 730 IPR007066 GO:0003677|GO:0003899|GO:0006351
Cme06g02680 1611 Gene3D RNA polymerase II, clamp domain 92 192 IPR044893 -
Cme06g02680 1611 Gene3D - 415 586 - -
Cme06g02680 1611 Pfam RNA polymerase Rpb1, domain 4 795 856 IPR007083 GO:0003677|GO:0003899|GO:0006351
Cme06g02680 1611 Pfam Protein of unknown function (DUF3223) 1400 1472 - -
Cme06g02680 1611 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 97 1006 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02680 K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] - csv:101214578 1911.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02680 Cme-Chr6:33922016 Cme09g01188 Cme-Chr9:16630374 8.57E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40