Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02685 TTTGAAGATAAAGGTTCACCTTTACTCACTGATGAGGTCCCTCGTCGAGTTGCAAAGTTCTCTCCACCACCATGTGCATGGGGAGATTACTTCATTTCATGCCATTCCAACTTCATGGACATGACAGAAAATGAGGAAGAGGAAAACATGGTGGAAAAAGAGCATGAAAAGCTTAAAGAAGAAGTAATAAGAATGTTGGTGGCTACCCCACAAAATTATTCTGAAAAGCTAAGTTTGATTGATTCAATTCAACGTTTAGGTTTCTCTTATTATTTCGATACAGAAATTAATGAAATCCTAAAGATTCAAAACTCTTTCAATCTCGACGACCGCGATGAAGACATTTACTATGCTTCTCTCAAATTTCGATTACTTAGACAACAAGGTTACTATGTTTCCTGTGAGATATTCAACAAATTTACAAATGAAGAGGGAGATTTCAAAGAATCAACTGTGAAGGGAAAAAGGGAAATAATGAGTTTGTATGAAGCATCACATTGGAGAATGAATGGAGAGATTATATTAGATAAAGCTTTGGCCTTTACAACTAAAAAGCTTGAAGAAATGGCTATGGATTTTAGCTGTCCTTATAGAGATGAAGCTAAATATGCTTTGAGATGGCCAATCCTTAAAGCTTTGCCAAGGCTTATCACCAAACACCATATCTCTACCTATGAAAAGGATCCATTGAAGAACAATGTTTTGCTCAAGTTTGCAAAGTTGGATTACAATGCTATGCAAAAACTCTACCAAAAAGAACTATATGAAGTTTCAAGGTGGTGGAAAGATTTGAAGTTGATGAAAGAACTATATTTTGCAAGAGATAGGATGGTCGAAAGTTACATTTGGGCATTGGGAGTATTTTATGAACCTAAATACTCTTACGGTAGAATAATATTGGCCAAGATTGCCGTTCTTACAATCCTTCTTGATGATATTTACGACGTCTATGGTACATTCGATGAGCTTGAATTATTCACAAATGCAATCGAAAGGTGGGATAGCATTGGCATTGAGAAACTCCCAAAGTGCATGAAAGTACTCTATAGAGCTATCTTAAAAGTTTATGAGGAGATTGAAAAAGATATCAGCAAGGACAACATTAATCCATATGCTATTCACTTTGCAAAAGAAGGGATGAAAAGGCAATGTAGAGCTTATTTTGCAGAAGCAAAATGGTTTCATGAAGGATATATGCCTACATTTGAAGAGTACATGAAAGTAGCAATTGTGTCAACTTGTTTTTATGTTTATGTTCCAATTTCATTTGTTGGAATGGGAGTTGCTGCTTCACAAGAGGTTTTTGAATGGGTTGAGAGTGACCCAATGCTTCTCAAAGCAAGTGGAATAATTGGGAGGCTCATGAATGACATAACTTCTCACAAGTTTGAACAAGAGAGGGGTCATATCGATTCTGCTGTTGAGTGCTACATGAAACAACATGAAGTATCAGAAGAAGATGCCATAGTTGAATTAGGAAAAGAAATCACAAAAGCATGGAAAGATATGATAGAAGATTACATTATGAAATCAACAAAGCTTTCAACTGCAATCGTTATACGTGTGCTGAATCATGGAAGACTCTCTGAGTTTTTCTATAAGAAGGAAGATGGTTACACATTTGTTCACGGAGACACCAAACATTTCATTACTGCTATGCTTATAGACCCCATACCAATATGA 1683 35.95 FEDKGSPLLTDEVPRRVAKFSPPPCAWGDYFISCHSNFMDMTENEEEENMVEKEHEKLKEEVIRMLVATPQNYSEKLSLIDSIQRLGFSYYFDTEINEILKIQNSFNLDDRDEDIYYASLKFRLLRQQGYYVSCEIFNKFTNEEGDFKESTVKGKREIMSLYEASHWRMNGEIILDKALAFTTKKLEEMAMDFSCPYRDEAKYALRWPILKALPRLITKHHISTYEKDPLKNNVLLKFAKLDYNAMQKLYQKELYEVSRWWKDLKLMKELYFARDRMVESYIWALGVFYEPKYSYGRIILAKIAVLTILLDDIYDVYGTFDELELFTNAIERWDSIGIEKLPKCMKVLYRAILKVYEEIEKDISKDNINPYAIHFAKEGMKRQCRAYFAEAKWFHEGYMPTFEEYMKVAIVSTCFYVYVPISFVGMGVAASQEVFEWVESDPMLLKASGIIGRLMNDITSHKFEQERGHIDSAVECYMKQHEVSEEDAIVELGKEITKAWKDMIEDYIMKSTKLSTAIVIRVLNHGRLSEFFYKKEDGYTFVHGDTKHFITAMLIDPIPI 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34054933 34061417 + MELO3C014045.2.1 Cme06g02685 331834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02685 560 PANTHER OS04G0344100 PROTEIN-RELATED 12 542 - -
Cme06g02685 560 Gene3D Farnesyl Diphosphate Synthase 36 547 IPR008949 -
Cme06g02685 560 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 24 228 IPR008930 -
Cme06g02685 560 SFLD Isoprenoid Synthase Type I 231 559 - -
Cme06g02685 560 CDD Terpene_cyclase_plant_C1 15 557 IPR044814 GO:0010333|GO:0016102
Cme06g02685 560 Coils Coil 41 64 - -
Cme06g02685 560 PANTHER TERPENE SYNTHASE 2-RELATED 12 542 - -
Cme06g02685 560 SUPERFAMILY Terpenoid synthases 232 560 IPR008949 -
Cme06g02685 560 Pfam Terpene synthase, N-terminal domain 27 192 IPR001906 GO:0010333|GO:0016829
Cme06g02685 560 Gene3D - 71 231 IPR036965 GO:0010333|GO:0016829
Cme06g02685 560 Pfam Terpene synthase family, metal binding domain 236 502 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cme06g02685 560 SFLD Terpene Cyclase Like 1 C Terminal Domain 231 559 IPR034741 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02685 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 csv:101210313 964.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02579 Cme-Chr6:32825486 Cme06g02685 Cme-Chr6:34054933 0 dispersed
Cme06g02685 Cme-Chr6:34054933 Cme06g02696 Cme-Chr6:34152204 0 dispersed
Cme06g02683 Cme-Chr6:33953314 Cme06g02685 Cme-Chr6:34054933 0 proximal
Cme06g02685 Cme-Chr6:34054933 Cme06g02687 Cme-Chr6:34075330 0 proximal
Cme06g02685 Cme-Chr6:34054933 Cme06g02688 Cme-Chr6:34084304 2.24E-25 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337