Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02696 ATGTCGTATGAAAAAATTACAGCAGCAAATAATGGATCTTTCAGTGATGGTGTTCTTCGTCGTCGAGCTGCAGAATTTCCGCCAAGTCCTTGGGGAGATTATTTTCTTTCCTCTCATTTCAACAATCAGCTGGACGTCGACCGCTCCGCATCATCTCACACATGTGACGACATACCATTAGTCGACGTTGAAGACAACGTGGTGGAGAAACAACAATTTCAAGAAGTGAAAGAAGAAGTGAGAAGCATGTTTGCAGCTGTTGAAAATTCTTCGGAAAGACTAAGTTTAATTGATTCAATCCAACGTTTAGGTCTTTCTCACCATTTTCAAGAAGAAATTAATGAAGTTGTTCTTGAACACATCGAAAAGTTTAGAAAAGATAACGACAACGATGCCGATGAGAACCTTTACATTATTGCTCTTCAGTTTCGAATGCTTAGACAACAAGGTTACTACGTTTCATGTGAGATATTCAATAAGTTTACAAATGAAAGGGGAGAATTCAAAGAATCAATTGCAAATGATGAAGTTGGTTTATTAAGTTTGTATGAAGCATCCCACTTGAGAACGAAGGGAGAAAATATATTGGATGAAGCATTAGCTTTCACAACTACTCATCTTAAAGCAATGGCCATGGATTCCAACTCTCCATTTTTTGAGGAAGCCAAATATGCATTGAAGTGGCCAATTTATAAAGCTGTGCCAAGGTTTATGGCTAGGCAATATATCTCTCTCTGTCACAAGAATCCATTGAAAACCAATAATGTTTTGCTCACTTTTGCAAAGTTGGACTACAATTCTCTCCAAAAACTTTACCAGAAAGAATTGGGCGAATTTTCAAGGTGGTGGAAAGAGCACAAGTTGAAGGAGCAATTACCTTTTGCACGAGTTAGAGTGGTGGAGATCTATGTTTGGGCATTAGGAGTTCAATATGAACCAAAATACTGTAATACTAGAAGAATATTAGCCAAAATTATTACTTTTATATCTGTTCTTGATGATATGTATGATGTCTATGCCACACTTGATGAACTTCAACTATTCACCAATGCCATTCAAAGGTGGGATGTGAGTTGCATTGAGAAGCTCCCAAATTACATGAAAGGACTTTATGAAACTATACTTGAAGTTTATGAAGAGATTGAAAAAGATATTTGCAAGGACAATAATATTCCATTTGCATTTGATTATGCAAAAGAAGCGTTGAAAAGTCTATGCAAAGCTTACTTTATGGAGGCTAAATGGTTCAATGAAGGTTATATACCAACAGTGGAAGAATATATGAAAGTTGCCAGAATTTCTGCTTCCTACAATGTTTTTGCTTCAATTTCCTTCCTTACTTTAGGAAATGTTGCTTCAAAGGAGTTTTATGAATGGGCTCAAACTGACCCTATTCTTCTTAAAGCAGCTGGTGTAATTGGCAGGCTCCTCAATGACATGGTTTCTCACAAGTTTGAACAAGAGCGAGGACATGTAGCTTCTGCAGTCGAATGTTACGTGAAAGAATATGAAGTATCAGAAGAAGAAGCCCTAATTGAATTAGAAAAGGAAGTCGGAACAGCATGGAAAGATGTGACAGAAGATTACACAAAATCTTCATTGAAGTTTCCAAATGTGATCCTCGAATGTGTGTTGAATGTTGCAAGACTTTCAGATTTCTTTTATAAGGAAGTAGATGGTTACACATTTGCTGATGGAGAAACCAAACATTTTATTGATTTAATGCTTACTCACCCTGTCCTCGTTTAA 1749 36.71 MSYEKITAANNGSFSDGVLRRRAAEFPPSPWGDYFLSSHFNNQLDVDRSASSHTCDDIPLVDVEDNVVEKQQFQEVKEEVRSMFAAVENSSERLSLIDSIQRLGLSHHFQEEINEVVLEHIEKFRKDNDNDADENLYIIALQFRMLRQQGYYVSCEIFNKFTNERGEFKESIANDEVGLLSLYEASHLRTKGENILDEALAFTTTHLKAMAMDSNSPFFEEAKYALKWPIYKAVPRFMARQYISLCHKNPLKTNNVLLTFAKLDYNSLQKLYQKELGEFSRWWKEHKLKEQLPFARVRVVEIYVWALGVQYEPKYCNTRRILAKIITFISVLDDMYDVYATLDELQLFTNAIQRWDVSCIEKLPNYMKGLYETILEVYEEIEKDICKDNNIPFAFDYAKEALKSLCKAYFMEAKWFNEGYIPTVEEYMKVARISASYNVFASISFLTLGNVASKEFYEWAQTDPILLKAAGVIGRLLNDMVSHKFEQERGHVASAVECYVKEYEVSEEEALIELEKEVGTAWKDVTEDYTKSSLKFPNVILECVLNVARLSDFFYKEVDGYTFADGETKHFIDLMLTHPVLV 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34152204 34157997 + MELO3C014051.2.1 Cme06g02696 331845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02696 582 Pfam Terpene synthase family, metal binding domain 258 524 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cme06g02696 582 Gene3D Farnesyl Diphosphate Synthase 268 582 IPR008949 -
Cme06g02696 582 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 28 248 IPR008930 -
Cme06g02696 582 CDD Terpene_cyclase_plant_C1 21 579 IPR044814 GO:0010333|GO:0016102
Cme06g02696 582 Gene3D - 70 267 IPR036965 GO:0010333|GO:0016829
Cme06g02696 582 Pfam Terpene synthase, N-terminal domain 69 226 IPR001906 GO:0010333|GO:0016829
Cme06g02696 582 SFLD Terpene Cyclase Like 1 C Terminal Domain 254 580 IPR034741 -
Cme06g02696 582 PANTHER OS04G0344100 PROTEIN-RELATED 16 565 - -
Cme06g02696 582 SUPERFAMILY Terpenoid synthases 254 580 IPR008949 -
Cme06g02696 582 SFLD Isoprenoid Synthase Type I 254 580 - -
Cme06g02696 582 PANTHER TERPENE SYNTHASE 2-RELATED 16 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02696 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - csv:101207286 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02683 Cme-Chr6:33953314 Cme06g02696 Cme-Chr6:34152204 2.53E-180 dispersed
Cme06g02685 Cme-Chr6:34054933 Cme06g02696 Cme-Chr6:34152204 0 dispersed
Cme06g02687 Cme-Chr6:34075330 Cme06g02696 Cme-Chr6:34152204 0 dispersed
Cme06g02688 Cme-Chr6:34084304 Cme06g02696 Cme-Chr6:34152204 4.18E-32 dispersed
Cme06g02696 Cme-Chr6:34152204 Cme11g00705 Cme-Chr11:8369304 0 dispersed
Cme06g02696 Cme-Chr6:34152204 Cme06g02697 Cme-Chr6:34159783 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337