Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02698 ATGGCCTCTACATCCTCCAAGAGACATGATCACTACAAAGGAATCCGCTGCCGGGGCGGCAAATGGGTCTCCGAGATTCGTGAGCCACGTAAGACTAACCGAATATGGCTCGGCACCTACCCTACACCTGAGATGGCTGCTGCCGCCTACGACGTAGCCGCACTCGCACTCAAGGGTTGCAATGCCGTTCTCAACTTCCCCGACTCAGTTGCCTCCTACCCGGTTCCTGCTTCCACGTCCCCCAATGATATCCGTATTGCTGCTGCTGCTGCCGCCGCGTCGAAAAGGGTCGATGATCAAGGAGAAAACAATTACCATAACTCTCACTACCAGTCTCCGCCAGCCAACGAGTTTGTCGATGAGGAGGCGCTGTTCGGAATGCCAAATCTTTTACTTGACATGGCTGAGGGAATGCTGTTGTCGCCGCCGCGAATGAACTCGTCTCCGTCTCGACATGATTACTACTCATGGAATTCGAGTGGAGACGGAAATCTTTGGAGCTACCACTAG 510 53.92 MASTSSKRHDHYKGIRCRGGKWVSEIREPRKTNRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDSVASYPVPASTSPNDIRIAAAAAAASKRVDDQGENNYHNSHYQSPPANEFVDEEALFGMPNLLLDMAEGMLLSPPRMNSSPSRHDYYSWNSSGDGNLWSYH 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34179875 34180384 - MELO3C014053.2.1 Cme06g02698 331847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02698 169 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Cme06g02698 169 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Cme06g02698 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 168 - -
Cme06g02698 169 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Cme06g02698 169 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Cme06g02698 169 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Cme06g02698 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 5 168 - -
Cme06g02698 169 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00960 Cme-Chr6:6836964 Cme06g02698 Cme-Chr6:34179875 2.58E-49 dispersed
Cme06g02698 Cme-Chr6:34179875 Cme09g01718 Cme-Chr9:21822340 1.57E-48 dispersed
Cme06g02698 Cme-Chr6:34179875 Cme06g00959 Cme-Chr6:6823248 2.16E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41569 PF00847 AP2 1.80E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02698 - - csv:101202953 334.724