Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02703 ATGTTTTCATCGTGTCCCGACATATGCAACACAACATCAAGAATAGCCATCTATCACGACGTTCCTTCTTCTGACGCCATTTTGTGTGTCGAGAATCCTCAAATTTCTTGTAGTAACAAAAGACAAAGTATGGATATGTGGGTTGCACATGGTTCTGATCTCAATGCTGCTGTGAATGCTTATTTCAATGAAGGAGATAGAAGTTCGTCTGTAAACGCACGTCAAGCCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAATTGAACCCCAGGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCCTTTTCATTACTTGATCAAAATCTGCGCCAGGGGTTCTTTGACCGCTCTTCTGATTTTACAAGGTCTGGTCCACTTGTGACTCATCCAAGAGAGTTGAGGGAGGTTCCCATAGAATTTAGAGATGGTAGTCGACCATCTAACCAATCAGCCCATGAGCCGACAATTGAGGATGTCACTGGGATTCCAGATGCCCATGGTCCAGAGGTTCATGGGACTGTAGTAGTTGATGATGGGGAAGATGAAGAACCTCCCATTACGTCTATAGCACATGCACCAGATTTAGACCATCGGGCTGTTGCAAGTAACATATCTCGTGACAGAAATGCTATATCTGGTGCCTTTGAAAGTGATGAGTTTCAGGACACAAATGATATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAGGATGTTGGGCAAGCTTACCCGAGTGATTCCATAACTACGCACACTGATTTAAGCAACATTAGAACTCAAGAACACCTTTCTCACGTAGATAATTTTGAATTTTCACCTGAAGCTTCATCTGTCAAGCCAGAGGAGGGTTTTCCTCAGCGAGTGGAGAATATTGGAGGGTCGAAGGTAGAAGCTTCCAAGTCAACTGAGGTGGATGTGGAGCTGAGGAAAGTCAGAGGACTGAATGGAAGGATGGAAACAGGAAGCACGTCTGCTCAAGACGAAGTTGAAGACCTAGAGGAAGATAATTTAGTTAGGCATCGGTCTAAACGCAAGTCCACTAGCTATGTAGAGCCTGCAAAGGGGGGTGAAGTAGATGTAAACCTTGCATCTAGTCCCAAGCATTCTGATACTAGCAATAATCCACAGCACAATGGGAATATCTTTCCTTCTGATGTGTGGGGTGGAATTTCTTCAGAGGAACATGATGAAGCAGTCATGCTGGAGGCTGCCATGTTTGGTGGAGCTTCTGAAGGAAGTTCGTTCCATTTTCCATCTGCACCACATGAATTCATGAGAAATCAAGGTTCATATGTCCAGCCAGCCCCTCGCCCTCCTTCTCCCTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAGCAGGATGATGAGTATCTTGCGGCCTTGCAAGCTGACAGAGAAAAAGAATTAAAGGCCATGGAAGAAGCTGCAGCTGTTCGTGAACAAGAAAGACAAAGAGAGGAAGAATCCCGTCAGAAATTGGATGCTGAGAAGGAACTTGAAAGACGCTTAGCAGAAATAGAAGCTTCTCTTCCTAGTGAACCAAGAACAGATGACGAGAATGCTGTGACACTATTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGGTTTCTCAAAACTGATAAGCTACAGTGTCTCTTGGACTTCATTGATATTGGTAGAGTTGTCAAGCCTGGCTCCTACAGACTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGAGAGGGTTCATTAACATTGAATGAACTCGGACTAAACAGCAAACAAGAAGCATTGTATCTCGAGTTGATTTAG 1842 44.52 MFSSCPDICNTTSRIAIYHDVPSSDAILCVENPQISCSNKRQSMDMWVAHGSDLNAAVNAYFNEGDRSSSVNARQASVSGEYDFMDIDDPVEIEPQGPPRSLLSTAREIMNPFSLLDQNLRQGFFDRSSDFTRSGPLVTHPRELREVPIEFRDGSRPSNQSAHEPTIEDVTGIPDAHGPEVHGTVVVDDGEDEEPPITSIAHAPDLDHRAVASNISRDRNAISGAFESDEFQDTNDIEEEMIRAAIEASKKDVGQAYPSDSITTHTDLSNIRTQEHLSHVDNFEFSPEASSVKPEEGFPQRVENIGGSKVEASKSTEVDVELRKVRGLNGRMETGSTSAQDEVEDLEEDNLVRHRSKRKSTSYVEPAKGGEVDVNLASSPKHSDTSNNPQHNGNIFPSDVWGGISSEEHDEAVMLEAAMFGGASEGSSFHFPSAPHEFMRNQGSYVQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKAMEEAAAVREQERQREEESRQKLDAEKELERRLAEIEASLPSEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLLDFIDIGRVVKPGSYRLVRPYPRKAFGDGEGSLTLNELGLNSKQEALYLELI 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34236721 34243832 - MELO3C014057.2.1 Cme06g02703 331852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02703 613 MobiDBLite consensus disorder prediction 314 328 - -
Cme06g02703 613 MobiDBLite consensus disorder prediction 347 364 - -
Cme06g02703 613 PANTHER OS09G0525600 PROTEIN 49 613 - -
Cme06g02703 613 MobiDBLite consensus disorder prediction 378 394 - -
Cme06g02703 613 Pfam UBX domain 532 611 IPR001012 GO:0005515
Cme06g02703 613 PANTHER FAS-ASSOCIATED PROTEIN 49 613 - -
Cme06g02703 613 MobiDBLite consensus disorder prediction 487 511 - -
Cme06g02703 613 Coils Coil 472 519 - -
Cme06g02703 613 MobiDBLite consensus disorder prediction 152 181 - -
Cme06g02703 613 CDD UBX 537 611 - -
Cme06g02703 613 MobiDBLite consensus disorder prediction 287 394 - -
Cme06g02703 613 SUPERFAMILY Ubiquitin-like 494 603 IPR029071 -
Cme06g02703 613 Gene3D - 532 612 - -
Cme06g02703 613 ProSiteProfiles UBX domain profile. 531 609 IPR001012 GO:0005515
Cme06g02703 613 SMART ubx_3 528 612 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02703 - - - csv:101208817 1031.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00210 Cme-Chr6:1279323 Cme06g02703 Cme-Chr6:34236721 2.05E-35 dispersed
Cme06g02703 Cme-Chr6:34236721 Cme12g01677 Cme-Chr12:23735553 5.89E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44