Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02708 ATGGATTCTGATGGGGTCGAATCAGAATCTACTCCGGCTATTTCCACCTGTCTCACCATTAAAATAGCTCAAACTTCCAGTAAACCGCCGGGGATATCTTCCGATGCGGCATTGCCGGAGCTGAAAAGCTCAATCGAATCGTCTCCTTATAACTCCCCTTCCCTTTTATCGCCGCCGTCGTCGGCGTTTGTTTCGGCTTTGCAGTCGCCGTACATTTCGCCGAGGGCGGTGGTCCATAAACCAGAAGAGAAGCCTATTCCGGCGGAGAGCACGGCGGCGCTGACTTGTCACTCGCCGCTGGTTTCCCAATCTGAGGATATTCCGAGTAGTTCCTACACTCCTCCCTCGGACCAATATGAATATTCCGATGACCCTTCTGATTCTAAGGTTCAGTTTGTCGCCTGTGTTCCGGTCCCCGACTCCGCCCCGCCTCGCATTTCGTTCTCCTTTCCCGTTCCTCGGACCTCCTTCGCCAAATGCGGCGGCCCCCTGTCCCCGGTTTCTACCTCTAAACTCAGAAGCTGTGATGTCTACATTGGCTTTCATGGCCAAGCCAATGGCTTGATACGCTTCTGTAAGTGGCTCAAATCAGAACTTGAACTTCAAGGAATTGCCTGCTTCATTGCTGACCGGTCCAAGTACTCCGACAACCAAAGCCACGAGATTGCTGACCGCGTTATCAGCTCCGTAACATTCGGAGTCGTCGTCCTCACAAGCTCTAGTTTCCATAACCATTTCACCTTGGAGGAGGTGAGATTCTTTGCACAGAAGAAGAACTTGATTCCATTCTTTTTCGACATGGAGTCGTCCGAGATCTCAAGCTTTCTCAACTATAATTCCATGGATAAAGAGTACAAAGAGACAGTGCAGGGATTGATGAAGTTCCATGAATACAAGTTGGAAGCCAATGAAGGTAATTGGAGAAGCTGTATAGCTAAAGCAGCTGGGATTTTGAGGGCAAAGCTTGGGAGGATGAGTACTGAAAGTGATGTTGAAAGATATGAGGAGCTGCCATTTCCAAGAAACAGATGCTTTTTGGGGAGGGAAAAGGAGATTATGGAAATGGAAGCTACTCTGTTTAGTGGTCGAAGCTATCATAAGCAAGACGGTACGGTTTCTACTCCGATTGTTGAAGGGAATTCCAGCCAGCAATCTGAAGGCTTAGCAGATGAAGAAAGTGAGCCAGTTAGTGTGAGGGGAAGTAGGTTCATCAATTTGGAGATAGGGAGGTCTGATAATCCAACTTTAGAGACATGGATTGAACCAGTTAAAGGAAGAAATTCATTCAAGAGATCAAAGCACAAGGAAATGGTCAAGAGTGGGAACCACAAGAGCTTGAGCAGCGGCATAGTGTGTATCAATGGAATCCCTGGAATTGGAAAAACAGAACTTGCTCTGGAATTTGCTTATAGATACTCCCAAAGATACAAGATGGTTTTATGGGTCGGTGGTGAAGCTCGGTACTTCCGACAAAATATATTGAACTTATCTTTGAACTTAGGGTTAGACATAAGTGCTGATGCCGAAAAGGATAGAGGGCGGTTTCGGAGTTTCGAGGAGCAAGAACTAGAGGCATTCAAAAGAGTCAAGAGGGAGCTGTTTGGAGACATGCCGTATTTGTTAATCATTGATAATCTTGAGGCAGAAGAGGACTGGTGGGAAGGGAAAGATTTGAACGATTTGTTGCCGAGGAACACCGGAGGATCTCATGTGATCATCACGACAAGAATCTCTAAGGTGATGAGTTTTCGGATGATTAACATTCATCCATTGCCTTTGGCTGATGCAATGGTTTTGATGAGAGGAAGAAGGAAGAAAGAATACCCAGCAGATGAATTGGAATATCTGAAGAAGTTCGATGAGAGGCTTGGGAGATTGACATATGGACTTTGGGTGATCGGATCGCTGCTTTGCGAGCTTGCAATCACCCCGTCCTCTCTTTTTGAAGCTATTGAACAAGTACCGATCGATGAATGTTCTCCCTGCTCTTATATAAGCATAAACGAAGAGCACTACTGCAAAAGCAATCCCTTCCTGATGAAGATCATTTACTTTTCTTTTTCCATATTGGAGCAAACTAATGGACCGTTAGCATCCGGAATATTTTTGGTTGGTGCCTGGCTCGCCCCAGCACCCATCTCAGTGTCTGTACTAGCCACAGCAGCAAAGGATATGGCTGTCTCAAGAAAAGGGTTGAAAATTTGGAGTAAATACTTGAGTTTCATGTTTGGTTGTTGCTCCTCTTGTTTAGCTTCACAAGCTTGGAAGAGTGAGGAAGAATCAGCTCTTCTTCTGATCAAGTTCGGACTCGCCCGGAAGGCGAACAAGCAAACTGGTAGTTGGATCCAATTCCATTCCATAACTCAACTGTTTGCCAAAAGAAAGGAGGGTTTATCACCTGCCAAATCTATAGTTCAAGGGATAAGGAAATGTAGTAGTAACACAATGGCAAACTTGGATCATTTATGGGCATCTGCATTTCTCGTCTTTGGTTTCAAATCCGAACCTCCATTCGTACAACTAAAGGCTGTTGATATGGTCCTATACATAAAAAAGGCTGCCCTTCCTTTGGCGATTCGGGCCTTCACAACATTTTCGAGATGCAACTCAGCACTAGAGTTGTTAAAGGTATGCACAAATGCACTTGAGGAAGTAGAGAAGTCATTTGTATCTCAAATACAAGACTGGTGTGAAGGGTCCTTGTGTTGGAAGAAAAAGTTCCAAGGCTATCAACGAGTCGATGAATACGTGTGGCAAGATGTGACGTTGCTAAAAGCTACATTGCTTGAAACTCGAGCGAAACTACTACTAAGAGGTGGACACTTTGACAGTGCTGAAGAACTATGTAGAACTTGCATAAGTATAAGAACAGTCATGTTGGGACATAACCATGCTCAAACCTTGGCAGCACAAGAAACGTTAGCAAAGATCGTTCGGCTTCGGAGCAAGATCTGA 2955 45.21 MDSDGVESESTPAISTCLTIKIAQTSSKPPGISSDAALPELKSSIESSPYNSPSLLSPPSSAFVSALQSPYISPRAVVHKPEEKPIPAESTAALTCHSPLVSQSEDIPSSSYTPPSDQYEYSDDPSDSKVQFVACVPVPDSAPPRISFSFPVPRTSFAKCGGPLSPVSTSKLRSCDVYIGFHGQANGLIRFCKWLKSELELQGIACFIADRSKYSDNQSHEIADRVISSVTFGVVVLTSSSFHNHFTLEEVRFFAQKKNLIPFFFDMESSEISSFLNYNSMDKEYKETVQGLMKFHEYKLEANEGNWRSCIAKAAGILRAKLGRMSTESDVERYEELPFPRNRCFLGREKEIMEMEATLFSGRSYHKQDGTVSTPIVEGNSSQQSEGLADEESEPVSVRGSRFINLEIGRSDNPTLETWIEPVKGRNSFKRSKHKEMVKSGNHKSLSSGIVCINGIPGIGKTELALEFAYRYSQRYKMVLWVGGEARYFRQNILNLSLNLGLDISADAEKDRGRFRSFEEQELEAFKRVKRELFGDMPYLLIIDNLEAEEDWWEGKDLNDLLPRNTGGSHVIITTRISKVMSFRMINIHPLPLADAMVLMRGRRKKEYPADELEYLKKFDERLGRLTYGLWVIGSLLCELAITPSSLFEAIEQVPIDECSPCSYISINEEHYCKSNPFLMKIIYFSFSILEQTNGPLASGIFLVGAWLAPAPISVSVLATAAKDMAVSRKGLKIWSKYLSFMFGCCSSCLASQAWKSEEESALLLIKFGLARKANKQTGSWIQFHSITQLFAKRKEGLSPAKSIVQGIRKCSSNTMANLDHLWASAFLVFGFKSEPPFVQLKAVDMVLYIKKAALPLAIRAFTTFSRCNSALELLKVCTNALEEVEKSFVSQIQDWCEGSLCWKKKFQGYQRVDEYVWQDVTLLKATLLETRAKLLLRGGHFDSAEELCRTCISIRTVMLGHNHAQTLAAQETLAKIVRLRSKI 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34278657 34281827 + MELO3C014062.2.1 Cme06g02708 331857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02708 984 SMART AAA_5 447 593 IPR003593 -
Cme06g02708 984 SUPERFAMILY Toll/Interleukin receptor TIR domain 174 276 IPR035897 -
Cme06g02708 984 MobiDBLite consensus disorder prediction 374 390 - -
Cme06g02708 984 Gene3D - 169 334 IPR035897 -
Cme06g02708 984 PANTHER DNA REPAIR PROTEIN RADA 12 984 - -
Cme06g02708 984 MobiDBLite consensus disorder prediction 102 125 - -
Cme06g02708 984 Pfam NB-ARC domain 444 583 IPR002182 GO:0043531
Cme06g02708 984 Gene3D - 421 587 IPR027417 -
Cme06g02708 984 ProSiteProfiles TIR domain profile. 173 325 IPR000157 GO:0007165
Cme06g02708 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 654 IPR027417 -
Cme06g02708 984 MobiDBLite consensus disorder prediction 40 58 - -
Cme06g02708 984 MobiDBLite consensus disorder prediction 102 121 - -
Cme06g02708 984 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 12 984 - -
Cme06g02708 984 MobiDBLite consensus disorder prediction 25 58 - -
Cme06g02708 984 MobiDBLite consensus disorder prediction 374 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02708 - - - csv:101212498 1896.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02708 Cme-Chr6:34278657 Cme09g01776 Cme-Chr9:22210668 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1274 Cone15ag1300 . . . Cme06g02708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012625 0 1 0 0 0 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 2 29