Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02711 ATGATTTTGTTTTACATTCTTTTCCCTTTAGGATTCGTCGTTCGGGCTCGGAATCGAGTAGTAATGGGGAGAACTGATGATAATGTTGCTATTATTGGGGATTGGGTACCTCCAAGTCCTAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTTCTAAACCTTCAATGGACACTACTACCAGCAGTGATCATAAAACCGAAGAACTCTTTCTCAGGCCTCGAGAACAAACCGTGTCCGAAAACGCCATTGCAAGAGGCGGGATCCCGGGTGTCAATTCAGGGGACCGGGGAATGGAGTTCGGTACGTTCTCAGAGCAGAAATTCCGTGGGGGACTCGTGGAAAGGATTGCAGCTAGAGCTGGCTTTAATGCTCCAAGATTGAATACAGAGAGCATTAGATCAACAGATCATTCTTTGAATTCAGAAGTAAAGTCTCCTTATTTGACAATACCACCTGGTCTCAGTCCAACTACATTGCTAGATTCTCCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGGAAGTTCCCATTTTTACCAAATGTAAGTAGCACTCGGAGCTCGACGATGATGCCAGAGGCCAACAACAAAGGCAACAACAATCCGTTCCACGATAACAATACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTTTTCTCAATGCAGCAAGCAAAACAGCTTCTGCTACTGTTCTTCCACAATCTTGTCCAAGAATTGAGCTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGCTGAACCATCTCTGTCTTTACCCCAAAATCGAATCGGTCACCATCCTCAAGTGGGACTCTCTACAACGTACGTTGAGAAGGACGATGGGAGTAAGGCTGTGTCAGAAGAGCAAAGACCCTTTGATTCTCTTGGTGGTGGTAGTGGTGAACATTCTTCGCCTCTCGACGAGCAACTGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGCTTGCGGTGCTCCCTCGGAGGATGGGTATAATTGGAGAAAATACGGACAAAAACAGGTCAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCTAACTGTCAGGTCAAGAAGAAGGTCGAGCGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCTTCACCAACCCGACGAGGAGCAATCGGATCTTCCGATTCCCATATGAATATGCAACTAGACATCCCTGCACAAGCAGGTCAACAAAGTGCTGATGTTCCTCTTTGGGAAGATTCACAAAAAGGGGTTCCAAGTGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCATCTTTGGGTCCTGAATATGGCAATCAGCCTAACACTTTACAAGCTCAAAATGGGAGTCATATTGAAACAGTTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAAGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGCGGGGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTTGTCCAGACTACCAGTGAAGTTGATATTCTGGATGACGGTTATCGTTGGCGCAAATACGGACAGAAGGTTGTTAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACAAATCCTGGCTGCACAGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAATCCGTGATAACCACATATGAAGGAAAACACAATCATGATGTTCCTGCAGCTCGCAACAGTAGTCACATCAGTTCAGGTACATCCAGTCCTGTAACTGGTCAAAACTCGACCGCGGCAATTCAAACTCATGCTCACAGGCCAGGGCCACCCCAGCCTCAAAATACCATTCCAAGATTTGAAAGGCCAGCTTTTGGGTTTGCTGGAAGACAGCAAATGGGGACTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGATTGGGAAATCTGACCATGGCAGCAGTTGGGCAACCCAAGCTTCCCGTCTTGCCAATGCATCCTTACTTAGGACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACTGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2307 45.95 MILFYILFPLGFVVRARNRVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSSKPSMDTTTSSDHKTEELFLRPREQTVSENAIARGGIPGVNSGDRGMEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSSTRSSTMMPEANNKGNNNPFHDNNTSFAFRPSVESGSSFFLNAASKTASATVLPQSCPRIELPVPRSENSFQSHLAEPSLSLPQNRIGHHPQVGLSTTYVEKDDGSKAVSEEQRPFDSLGGGSGEHSSPLDEQLDEGEQRGSGDSMAGGACGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPTRRGAIGSSDSHMNMQLDIPAQAGQQSADVPLWEDSQKGVPSGAPDWMHENLEVTSSASLGPEYGNQPNTLQAQNGSHIETVEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAIQTHAHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAHGFAFGMNQPGLGNLTMAAVGQPKLPVLPMHPYLGQAHHVNEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34310802 34315329 - MELO3C014066.2.1 Cme06g02711 331860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02711 768 Gene3D WRKY domain 551 617 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 MobiDBLite consensus disorder prediction 618 643 - -
Cme06g02711 768 ProSiteProfiles WRKY domain profile. 559 624 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 SUPERFAMILY WRKY DNA-binding domain 348 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 Gene3D WRKY domain 344 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 SUPERFAMILY WRKY DNA-binding domain 556 624 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 Pfam WRKY DNA -binding domain 350 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 Pfam WRKY DNA -binding domain 565 621 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 129 692 IPR044810 GO:0003700
Cme06g02711 768 MobiDBLite consensus disorder prediction 626 643 - -
Cme06g02711 768 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 129 692 - -
Cme06g02711 768 ProSiteProfiles WRKY domain profile. 344 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 MobiDBLite consensus disorder prediction 262 356 - -
Cme06g02711 768 SMART WRKY_cls 349 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 SMART WRKY_cls 564 623 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02711 768 MobiDBLite consensus disorder prediction 499 532 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02569 Cme-Chr4:31781630 Cme06g02711 Cme-Chr6:34310802 1.70E-14 dispersed
Cme06g02711 Cme-Chr6:34310802 Cme06g02787 Cme-Chr6:35108962 9.64E-102 dispersed
Cme06g02711 Cme-Chr6:34310802 Cme10g00381 Cme-Chr10:2444550 2.10E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41573 PF03106 WRKY 3.20E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02711 K18835 - csv:101207853 1401.73