Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02728 ATGGCTTCATCATCACTAACCTCCTTCCAATTTCGTTCCACGCCATACCATTGCTTCCCTAAAATACCCACAATTTCTTTTTCCTCTTACCCCATCGACGACAACCGGACCTTCTCTTTTGGTTTCTTTCACTACACGCCAAGTTTTCCCGAAAAATTTTCTCCCCTGAGTTGGCTTCAATTCATTGGATTCATCTGTTCGTGTTTGACTTGGATTGGTGAGATGTTCGATAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTTATGCCTTTTGGGCCTCTAGCAGTTCTTGTGGATGAGTTAGCTGGACACAATCTTTTTGCAGCTCAGTTAATTTTTCCTTTGAAACAGGCAGCTAGCTTTTTACACTGGACCTACAGGCAGTCTCATTTATATACTGTTTTCTTTTGTTGTTCAATTTTCTCCGCTGACCTGAAGAATGAATCTGCAGCTGGTGGTCTTCTAAATGCTACTTTTGGAAATGCTACAGAACTGATTATATCTATTTTTGCACTGAGAAGTCAAATGATACGTGTTGTTCAGCTGTCATTGCTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATCAAAAGGAACAGACGTTTAACAAGGCAACTGCTGTTGTCAACTCAGGATTGTTATTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACCCACGGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTCTCGAGATTCAGCAGTTGCATTATGCTTCTAGCTTATGCTGCTTATCTCTTCTTCCAATTGAGAAGTCAAACGAATCTTTATTCTTCTGTTTATGAGGAAGAAACTCACAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATTTCCAAGTGGGAGTCAGTTATCTGGCTATCAATTTTGACTGTCTGGATCTCTGTTCTATCAAAATATTTAGTCGATGCAATCGAGATTGCATCTGAATCATTGAAAATCCCAGTGTCCTTTATTAGTGTTATACTGCTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTAGATATTTCTCTCGGTGTAGCTATCGGGTCATCAACTCAGATATCTATGTTTGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCAATGGACTTGAACTTTCAACTCTTTGAGACGGCAACACTTTTTATTACTGTAATAGTCGTAGCTTTCTTGCTCCAGCTAGCTTTTTCGTGCACGTCGATCCTCCTTTATCCGCATTGTGAGCCCATTGTTGAAGAAATACAAAGAGGCTATTTCTTAGGTGGCTATCTTCTGTGTGAGCGAAACGAACAGAAGGCCACGTGA 1434 41.49 MASSSLTSFQFRSTPYHCFPKIPTISFSSYPIDDNRTFSFGFFHYTPSFPEKFSPLSWLQFIGFICSCLTWIGEMFDSFAYKSVKIVIFTNKLNFLMPFGPLAVLVDELAGHNLFAAQLIFPLKQAASFLHWTYRQSHLYTVFFCCSIFSADLKNESAAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYQKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHGEAHFGKSELALSRFSSCIMLLAYAAYLFFQLRSQTNLYSSVYEEETHSEESSDEDEAPEISKWESVIWLSILTVWISVLSKYLVDAIEIASESLKIPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQLAFSCTSILLYPHCEPIVEEIQRGYFLGGYLLCERNEQKAT 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34485999 34490967 + MELO3C032282.2.1 Cme06g02728 331877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02728 477 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 76 437 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cme06g02728 477 TIGRFAM cax: calcium/proton exchanger 157 434 IPR004798 GO:0006816|GO:0015369
Cme06g02728 477 Pfam Sodium/calcium exchanger protein 155 283 IPR004837 GO:0016021|GO:0055085
Cme06g02728 477 Pfam Sodium/calcium exchanger protein 318 438 IPR004837 GO:0016021|GO:0055085
Cme06g02728 477 Gene3D - 304 448 IPR044880 -
Cme06g02728 477 Gene3D - 155 297 IPR044880 -
Cme06g02728 477 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 76 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02728 Cme-Chr6:34485999 Cme11g01002 Cme-Chr11:14304866 7.81E-166 dispersed
Cme06g02728 Cme-Chr6:34485999 Cme04g02718 Cme-Chr4:32580817 3.95E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02728 K07300 - csv:101205761 551.592