Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02755 ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGTAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCATAACGAGAAACGAAAAACTATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACAACGCTTGCCTCACGTGACTCCGCCGCCTCCTCCGCTCCGAACTCCGCCGCAGCGGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGGGGATG 459 55.56 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGM 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34811100 34811558 + MELO3C014103.2.1 Cme06g02755 331904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02755 153 Gene3D Histone, subunit A 11 136 IPR009072 GO:0046982
Cme06g02755 153 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 143 - -
Cme06g02755 153 SUPERFAMILY Histone-fold 22 133 IPR009072 GO:0046982
Cme06g02755 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cme06g02755 153 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme06g02755 153 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cme06g02755 153 MobiDBLite consensus disorder prediction 1 23 - -
Cme06g02755 153 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cme06g02755 153 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cme06g02755 153 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02349 Cme-Chr1:31831207 Cme06g02755 Cme-Chr6:34811100 1.41E-52 dispersed
Cme06g02755 Cme-Chr6:34811100 Cme11g00968 Cme-Chr11:13736069 5.91E-64 dispersed
Cme06g02755 Cme-Chr6:34811100 Cme04g02561 Cme-Chr4:31731751 7.26E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41575 PF00808 CBFD_NFYB_HMF 1.30E-27 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02755 K08065 - csv:101204640 249.595