Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02768 TTAGAAAAAAGAAAAAAAGAAACTCACAAGAGAAAAAAAAAAAGGAAGTTCGACACGTCGTTTTACAAGAGTAGCCAGGAGGCTGAGACGACAAGTCGGCTTTGGCCTTATTTCATCGTCGTCTCTTTACCCTTCAACCTCAGTGATGCAAATCTCCCGGTAGACTCAGCGATGCATCCATCTCATCCTCTTTGGGCGCGGCGGCTTTTTTGCTTCATCAGAACTACAAACTACTCCTCCGCCGCCGTTACTGCTCCGGCCACCGCCTCGAACTCCAGTTTTCCCCTCAAGAATGTGACCAAGTCGAACTTCGAAGCTGCGTTATCGGAACTTCGAAGCCATGTCCGAGCTGCGGACTTCGTCGCCGTCGACCTCGAAATGACCGGCATCACCAGCGCCCCTTGGCGCGACTTGTTGGAGTTCGATCGCTTTGATGTTCGTTACCTCAACGTCAAGGACTCTGCTGAGAAGTTCGCCGTTGTTCAATTCGGCGTCTGCCCGTTCCGTTGGGACTCCGCCAAAAAGTCATTCGTCGCTCACCCGCATAACTTTTTTATTTTCCCACGCCATGAAATTGAAGTCGATGGCCCTTCTTCCGAGTTCCTCTGCCGGACAACCTCCCTGGAATTCTTAGCTAAATACCAATTTGATTTCAACGCTTGTATATATGAAGGAATATCTTATTTGTCCAGAGCACATGAAGATGCAGCACGTAAACGTTTGAATTTTGCATATGGGGATGAAATGTTAGATGCATCTTCTAATGTGACCAATGTTAGGGATAAGAAGAGGGTCGGCATTGCTGATGTTTTATTCAGAGAAAGAATGAAAAACAGATTACACGAATGGCGGGACAGATTACTATCTGAAAGAAACATGGAGTTTCAAGGCCAAGAAGGGTCAAATGATCACAAACGACAATTTCAAACCATTTTCTTCAAGACGCGACCTGCTCTTACTTTGAGTGATTTTACCTCTCATCAGATAAAATTGATTCAGCTGGTAATTAAGAAGCATTTTGAGGATCTTTGTTTTGTTGTCGTGAATGATGGTAATGCAGATCTACAACAGTTTGTCGTGTACGTGGATTCTAGAGACGATAAAGAGCTGCTCATGCAAGAGGTAAACCGTGACCAGAATAAAGCAGCTGAAACGAAGATACAATCTGCAATAGGGTTTCGTCATGTTATTGATCTCCTTTCATCGGAAAAGAAGCTAATTGTTGGTCATAATTGTTTCCTTGCTAACACATCTGTTTTTGGACCAGATATGCTTCACATACACAGAAAATTTATTGGCTCTCTTCCTTCAACCGCAGAAGAATTTGTCTCTTCTTTTGGAAAACACTTTCCATACGTCATGGATACCAAAATTCTCTTAAATGACAATTATATTCTTCGACGACGGATGAATAAGTCCAACACATCTCTATCCTCCGCCTTTGGCTCATTATGCCCGCATATTGCCTTCAGCTCTCTGAGGGTTAATGCCTTGAACGATTGTGTGCAAGTGGAGGTTCAAGTAGATGATCTAAGATCCTCCAAATGGAACTCCGGAGATAAACATGAAGCTGGGTACGATGCTTTTATGACAGGATGTGTATTTGCTCAAGCATGTAATCTTATGGGAATTGATTTTGTAGATTGTTCAACTTCCAAAAATTTGGTTGACAATGAGATATTGCAAAAGCACATCAATCGTCTGTATTTGAATTGGGCCAGTGGAGATATTATTGATCTAAGCACTGGTAACCAAGTGACCGAGTCTTTCAAGACTAGAAAGCATCGAGTGCGAGTATCGTTTGAGAACATTGTTCTAATCTGGGGATTTTCTACCAACCTTACTGCAAGAAAGATCAAAGCATGCATCTCTAAAGTCTTCGGCCAGGCCAATGTCTCTAGTGTCAACCATTTAGATGAAAGTGCTGTGTTTGTGCAGTTTACAAAGCCAGAAATGGTTTCCGAATTTCTCAACTTAAAGGAGAAGTTGGAGAAGCGTGATGATCCAATATCAGTTTTGCATCCTCTCACTGAACTTTTCGATGCTAGGGCTACTCATGCTGCAGGCTATGAAGCATACAAGAAAATTTGCAGCTCTCCCATGTCGAAACTCTTGTTTTCTGATCAGGCAGAGGCAGTTGGGATTAACCGAAAGACGATGTTGATAAAATCTGAGGCAAAAAGGAGCAAAATTGACCAAGCTGTTGACATGTTGGATGAGACTACTGAAATACAGGGAACGGAGGGGGAAGCAAATGATCTAAGCAGCACTAACTACCAGAGTTTACGATCTTCTTCAATGTAA 2304 42.75 LEKRKKETHKRKKKRKFDTSFYKSSQEAETTSRLWPYFIVVSLPFNLSDANLPVDSAMHPSHPLWARRLFCFIRTTNYSSAAVTAPATASNSSFPLKNVTKSNFEAALSELRSHVRAADFVAVDLEMTGITSAPWRDLLEFDRFDVRYLNVKDSAEKFAVVQFGVCPFRWDSAKKSFVAHPHNFFIFPRHEIEVDGPSSEFLCRTTSLEFLAKYQFDFNACIYEGISYLSRAHEDAARKRLNFAYGDEMLDASSNVTNVRDKKRVGIADVLFRERMKNRLHEWRDRLLSERNMEFQGQEGSNDHKRQFQTIFFKTRPALTLSDFTSHQIKLIQLVIKKHFEDLCFVVVNDGNADLQQFVVYVDSRDDKELLMQEVNRDQNKAAETKIQSAIGFRHVIDLLSSEKKLIVGHNCFLANTSVFGPDMLHIHRKFIGSLPSTAEEFVSSFGKHFPYVMDTKILLNDNYILRRRMNKSNTSLSSAFGSLCPHIAFSSLRVNALNDCVQVEVQVDDLRSSKWNSGDKHEAGYDAFMTGCVFAQACNLMGIDFVDCSTSKNLVDNEILQKHINRLYLNWASGDIIDLSTGNQVTESFKTRKHRVRVSFENIVLIWGFSTNLTARKIKACISKVFGQANVSSVNHLDESAVFVQFTKPEMVSEFLNLKEKLEKRDDPISVLHPLTELFDARATHAAGYEAYKKICSSPMSKLLFSDQAEAVGINRKTMLIKSEAKRSKIDQAVDMLDETTEIQGTEGEANDLSSTNYQSLRSSSM 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34937663 34941759 + MELO3C014116.2.1 Cme06g02768 331917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02768 767 Pfam CAF1 family ribonuclease 99 535 IPR006941 -
Cme06g02768 767 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 94 721 - -
Cme06g02768 767 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 94 721 - -
Cme06g02768 767 MobiDBLite consensus disorder prediction 746 767 - -
Cme06g02768 767 SUPERFAMILY Ribonuclease H-like 96 551 IPR012337 -
Cme06g02768 767 Gene3D - 98 268 IPR036397 GO:0003676
Cme06g02768 767 Gene3D - 348 584 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02768 K01148 PARN, PNLDC1; poly(A)-specific ribonuclease [EC:3.1.13.4] - csv:101222826 1253.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01935 Cme-Chr1:27768099 Cme06g02768 Cme-Chr6:34937663 4.64E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g677 . . . . Bpe09g00121 . . Bma13g01121 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1229 Cone15ag1253 . Csa03g00422 . Cme06g02768 . . . Bda12g00970 . . . . . . . . . . . Cpe14g00784 . Bhi11g00474 . . . . . . . . . . . . . . . Chy06g01891 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009803 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 31