Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02771 GATGGTGACCCCAAACAAGGCAACCTCCATCAACAACACTCCGAACAGCAATCACCATCTCTCGAACGGAGGAACCGCCCTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCAAACAATAATGAGCAAAACCAACAATGCGTTGTGCGAGAACAAGACCAATACATGCCCATTGCTAATGTGATACGAATCATGAGGCGAATTTTGCCCTCCCATGCAAAGATATCCGACGACGCCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTGGCGAGGCGAACGAACGATGCCAGCGGGAGCAACGCAAGACCGTGACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGGGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATCTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCGCCATACGGGCAGGCGTTTCAGATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGCGGAGGCGGTGGGCCGAGCGCAGGGAACGGCAGCCAGCTTTGA 630 53.97 DGDPKQGNLHQQHSEQQSPSLERRNRPGNSSATSPLSVAATANNNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34982615 34983308 + MELO3C014120.2.1 Cme06g02771 331920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02771 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 123 IPR003958 -
Cme06g02771 209 SUPERFAMILY Histone-fold 56 149 IPR009072 GO:0046982
Cme06g02771 209 MobiDBLite consensus disorder prediction 1 36 - -
Cme06g02771 209 Gene3D Histone, subunit A 45 159 IPR009072 GO:0046982
Cme06g02771 209 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Cme06g02771 209 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Cme06g02771 209 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Cme06g02771 209 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 27 164 - -
Cme06g02771 209 MobiDBLite consensus disorder prediction 9 36 - -
Cme06g02771 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cme06g02771 209 ProSitePatterns NF-YB/HAP3 subunit signature. 90 106 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01777 Cme-Chr2:24637859 Cme06g02771 Cme-Chr6:34982615 6.14E-17 dispersed
Cme06g02771 Cme-Chr6:34982615 Cme07g01729 Cme-Chr7:22788772 7.99E-47 dispersed
Cme06g02771 Cme-Chr6:34982615 Cme04g02561 Cme-Chr4:31731751 2.54E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41576 PF00808 CBFD_NFYB_HMF 2.40E-25 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02771 K08065 - csv:116402762 338.576