Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02784 ATGGAGTTTTCTGGTCACACCAAAACTGTATTCCATCGAATCCGTCAAATCGATCCCGACAACGTCATGAAGATCATTGGTTTTTTACTTCTCCATGACGATGGAGATCAAGAAATGGCTAGATTAGCACTAGCACATGAAAGCCATATAGAAAAAGTTGTTATGCTAGCCAAGACTGAGCTGCATCAACGACGATCGATGCCAGTCCCGGTATCACCATTAGCCATTAGAAACAGGCAGTCTTCAACTTCCCCTCCAGGTTGGGAGCAACAACAGCTTACTAACAAGCATACTCCTGATTACATACCATTAGGCTACCATGATTCTATGTATGACATACAAAATTCAGTTAACTTATTTTGTTTAGAGGACCATTTGGAACAGTCTCTCTCTAGCTTTGATTGTAGCTATGCTGAAAATGTGATCAATAGCTTTAGTACTAGGAACACCCGCCATTACTCGAATGTGCCTGATTTTCAGCCTAGGACATGTCACTACTACAACAAAGGATTTTGCAAGCATGGAAATAGCTGTAGGTATCTCCATAGCAATAACCTCCTGCCTGGGAGCCTTTCTCATCTGTATAATAGCAATTCTAATGTCAATGATGATCATGTTTTCCGACCTGGTTCGCTGGAGAGGTTGGAGTTTGAAATTGTCGAGCTTCTTAAATCAAGAAGAGGCAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAGAAGTATGGAAAAGTTCTCCAAGCTGAAGGTTACTTAACTGAGAGCCAAAGGCATGGTAAATCAGGTTTTAGCTTGACAAAGCTCCTCACTCGATTGAAAAGCAGCATCCAAGTGATCGACAGGCCTCATGGACAGCATGCAGTCATTTTGGCAGAAGATGCTCCGAAATTCATGGACCATAGGAAGGATAGGAATGATCCCGGTTCGATTGTTAGCAGCGCCCGACAGATATATATGACATTTCCAGCTGACAGTACCTTCACAGAAGATGATGTTTCTGATTACTTCAGGCAAATGCTAAATGCTTGTATTTGTCTTGGCTTTGTCCACTATGGAATGGTTGAAGATGTAAGGATACCCTGCCAACAAAGAAGGATGTTCGGGTTTGTTACATTTCACAGTATCGAGACTGTGAAACTAATCTTGTCTGATGATAGTGAGCATTTAATTTGCGGGGCTCGGGTTCTCGTGAAGCCTTATAGAGAAAAGTCTAAGCTATTGGAAAGGAAATACCAAGAAAGAATTGAACAACAGCAAGATTACTTTTCACACTACAACAACCTTGAATCCGAGCAGCTTCACTCGATTGCTAGAGGCTATGATTTTCCCCCCACAATGCTGAGACTAAGGATGGAAGAGCAGCAACAACAACAACAACGTGCACTCGAGAGGAGCCTTTCTGAGATGACCTTAGTTCAGAAATCGGTCGTGAATCAGCCCTACTTTAGCTATCAGATGAACGAACTGAAACTTCCTGTCCCTGAAGATACAGAAAGTTTTGACCATTTGATGGATATTCTCAACGTTCTGAATAGTGGCACTAACTCTAGCTCGAGCTCCACTGATGATAATAAGCAACCCCAACCCCAAAACATGACAGATTGGAATCACATCGAACTCAACCTCCAGGGGTGA 1641 42.29 MEFSGHTKTVFHRIRQIDPDNVMKIIGFLLLHDDGDQEMARLALAHESHIEKVVMLAKTELHQRRSMPVPVSPLAIRNRQSSTSPPGWEQQQLTNKHTPDYIPLGYHDSMYDIQNSVNLFCLEDHLEQSLSSFDCSYAENVINSFSTRNTRHYSNVPDFQPRTCHYYNKGFCKHGNSCRYLHSNNLLPGSLSHLYNSNSNVNDDHVFRPGSLERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHAVILAEDAPKFMDHRKDRNDPGSIVSSARQIYMTFPADSTFTEDDVSDYFRQMLNACICLGFVHYGMVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKSKLLERKYQERIEQQQDYFSHYNNLESEQLHSIARGYDFPPTMLRLRMEEQQQQQQRALERSLSEMTLVQKSVVNQPYFSYQMNELKLPVPEDTESFDHLMDILNVLNSGTNSSSSSTDDNKQPQPQNMTDWNHIELNLQG 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35083072 35086088 + MELO3C014131.2.1 Cme06g02784 331933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02784 546 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 531 - -
Cme06g02784 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 404 IPR000504 GO:0003723
Cme06g02784 546 SUPERFAMILY CCCH zinc finger 156 185 IPR036855 GO:0046872
Cme06g02784 546 Gene3D - 324 408 IPR012677 -
Cme06g02784 546 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 531 - -
Cme06g02784 546 SUPERFAMILY RNA-binding domain, RBD 328 433 IPR035979 GO:0003676
Cme06g02784 546 ProSiteProfiles Zinc finger C3H1-type profile. 158 185 IPR000571 GO:0046872
Cme06g02784 546 SMART c3hfinal6 158 184 IPR000571 GO:0046872
Cme06g02784 546 ProSiteProfiles OST-type HTH domain profile. 211 294 IPR025605 -
Cme06g02784 546 MobiDBLite consensus disorder prediction 513 537 - -
Cme06g02784 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 161 183 IPR000571 GO:0046872
Cme06g02784 546 Gene3D - 156 215 - -
Cme06g02784 546 Pfam OST-HTH/LOTUS domain 211 289 IPR025605 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02784 - - - csv:101203347 942.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02784 Cme-Chr6:35083072 Cme09g01070 Cme-Chr9:14991056 3.93E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41577 PF12872 OST-HTH 4.80E-10 CL0123 Cme TF