Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g02787 | ATGGACCCCACTGATTCCGACCTCCCCGATCCATCTAATGCCTCCTCCGGTGCTAAGTACAAGCTCTTGTCTCCGGCCAAGCTTCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCTGGCCTCAGTCCCACTTCATTTCTCGACTCTCCTGTTCTTCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCAATGGCACACGACTCTTCTAGCTCAGCGATTTATCCAATGACCAGCATGGCTTTCTCAAATACTAATGCCTCAGATGAAGGAAGATCCAACTACTTTGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGGTCAACCCCAACCTTTTACTGCTCCACCCATGACTAAATTCGAGATCAGTGTCATGTCAAATGATTTGAGTCGATCAACCCAGATGGACACACATACAGTTACTTCAGGGGCTAGTGTTCCTGAAGCCGATGGAGACGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTAGTTTCAGATAGGTTATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAACTGATATTATCTATAAAGGTACCCATGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTATGAATGTTCAAGAAGATGGGACTGATAAGCCTTCATCTTTATCTGGCCAAGATGACAGGTCTTGCAGCATGTATGCTCAGTCTATGCATACCATTGAACCAAATGGAACTACAGATCCATCCCTGCCTGCAAATGATAGCATCACCGAAGGTGCAGGAACAACTCTGTCATGCAAGAATCACGATGAGGTTGATGACGATGACATATACTTGAAACGGAGGAAAATGGAACTCGGTGGTTTTGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAGACTCTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGGAAATATGGTCAGAAGGTAGTGAGAGGAAATCCCAACCCGAGGAGTTATTACAAATGCACGAATGTTGGATGCCCTGTTCGAAAGCATGTTGAAAGAGCATCCCATGACCCAAAAGCTGTTATTACTACATATGAAGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCACTGGCCCATCAACAATTCCATCATCAAGGTATAGACTCGAGGAGAGTGACACCATAAGCCTTGATCTCGGCGTTGGCATTGGCACAGGTGGTGAGAATAGACCAAATGAATACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCGAGCTCCAAATGGCAATTTCAACTTCGAAGTAGTTCAAGAGAACTCGGCGCCCACCTATTTCGGTGTGCTGAATAGAGGTGTCATCAATTAG | 1602 | 45.26 | MDPTDSDLPDPSNASSGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPMTSMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQSSEVQGQPQPFTAPPMTKFEISVMSNDLSRSTQMDTHTVTSGASVPEADGDDINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYSASASMNVQEDGTDKPSSLSGQDDRSCSMYAQSMHTIEPNGTTDPSLPANDSITEGAGTTLSCKNHDEVDDDDIYLKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVTGPSTIPSSRYRLEESDTISLDLGVGIGTGGENRPNEYRQALHSQLVENRAPNGNFNFEVVQENSAPTYFGVLNRGVIN | 533 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 35108962 | 35117914 | - | MELO3C014134.2.1 | Cme06g02787 | 331936 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g02787 | 533 | SMART | WRKY_cls | 385 | 444 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | SMART | WRKY_cls | 209 | 267 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | ProSiteProfiles | WRKY domain profile. | 380 | 445 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | MobiDBLite | consensus disorder prediction | 441 | 462 | - | - | |
Cme06g02787 | 533 | MobiDBLite | consensus disorder prediction | 157 | 211 | - | - | |
Cme06g02787 | 533 | PANTHER | WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED | 10 | 527 | - | - | |
Cme06g02787 | 533 | MobiDBLite | consensus disorder prediction | 118 | 141 | - | - | |
Cme06g02787 | 533 | SUPERFAMILY | WRKY DNA-binding domain | 377 | 445 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | MobiDBLite | consensus disorder prediction | 272 | 299 | - | - | |
Cme06g02787 | 533 | ProSiteProfiles | WRKY domain profile. | 204 | 268 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | Gene3D | WRKY domain | 372 | 438 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | SUPERFAMILY | WRKY DNA-binding domain | 206 | 268 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | Pfam | WRKY DNA -binding domain | 386 | 442 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | Pfam | WRKY DNA -binding domain | 210 | 266 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | MobiDBLite | consensus disorder prediction | 259 | 299 | - | - | |
Cme06g02787 | 533 | Gene3D | WRKY domain | 203 | 269 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g02787 | 533 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 10 | 527 | IPR044810 | GO:0003700 | |
Cme06g02787 | 533 | MobiDBLite | consensus disorder prediction | 448 | 462 | - | - | |
Cme06g02787 | 533 | MobiDBLite | consensus disorder prediction | 179 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g00537 | Cme-Chr1:4022838 | Cme06g02787 | Cme-Chr6:35108962 | 6.74E-77 | dispersed | |
Cme06g02711 | Cme-Chr6:34310802 | Cme06g02787 | Cme-Chr6:35108962 | 9.64E-102 | dispersed | |
Cme06g02787 | Cme-Chr6:35108962 | Cme10g00381 | Cme-Chr10:2444550 | 2.56E-15 | dispersed | |
Cme06g02787 | Cme-Chr6:35108962 | Cme09g00236 | Cme-Chr9:1797171 | 3.35E-18 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41579 | PF03106 | WRKY | 3.00E-25 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g02787 | - | - | csv:101219838 | 1052.74 |