Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02787 ATGGACCCCACTGATTCCGACCTCCCCGATCCATCTAATGCCTCCTCCGGTGCTAAGTACAAGCTCTTGTCTCCGGCCAAGCTTCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCTGGCCTCAGTCCCACTTCATTTCTCGACTCTCCTGTTCTTCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCAATGGCACACGACTCTTCTAGCTCAGCGATTTATCCAATGACCAGCATGGCTTTCTCAAATACTAATGCCTCAGATGAAGGAAGATCCAACTACTTTGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGGTCAACCCCAACCTTTTACTGCTCCACCCATGACTAAATTCGAGATCAGTGTCATGTCAAATGATTTGAGTCGATCAACCCAGATGGACACACATACAGTTACTTCAGGGGCTAGTGTTCCTGAAGCCGATGGAGACGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTAGTTTCAGATAGGTTATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAACTGATATTATCTATAAAGGTACCCATGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTATGAATGTTCAAGAAGATGGGACTGATAAGCCTTCATCTTTATCTGGCCAAGATGACAGGTCTTGCAGCATGTATGCTCAGTCTATGCATACCATTGAACCAAATGGAACTACAGATCCATCCCTGCCTGCAAATGATAGCATCACCGAAGGTGCAGGAACAACTCTGTCATGCAAGAATCACGATGAGGTTGATGACGATGACATATACTTGAAACGGAGGAAAATGGAACTCGGTGGTTTTGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAGACTCTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGGAAATATGGTCAGAAGGTAGTGAGAGGAAATCCCAACCCGAGGAGTTATTACAAATGCACGAATGTTGGATGCCCTGTTCGAAAGCATGTTGAAAGAGCATCCCATGACCCAAAAGCTGTTATTACTACATATGAAGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCACTGGCCCATCAACAATTCCATCATCAAGGTATAGACTCGAGGAGAGTGACACCATAAGCCTTGATCTCGGCGTTGGCATTGGCACAGGTGGTGAGAATAGACCAAATGAATACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCGAGCTCCAAATGGCAATTTCAACTTCGAAGTAGTTCAAGAGAACTCGGCGCCCACCTATTTCGGTGTGCTGAATAGAGGTGTCATCAATTAG 1602 45.26 MDPTDSDLPDPSNASSGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPMTSMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQSSEVQGQPQPFTAPPMTKFEISVMSNDLSRSTQMDTHTVTSGASVPEADGDDINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYSASASMNVQEDGTDKPSSLSGQDDRSCSMYAQSMHTIEPNGTTDPSLPANDSITEGAGTTLSCKNHDEVDDDDIYLKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVTGPSTIPSSRYRLEESDTISLDLGVGIGTGGENRPNEYRQALHSQLVENRAPNGNFNFEVVQENSAPTYFGVLNRGVIN 533
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 35108962 35117914 - MELO3C014134.2.1 Cme06g02787 331936
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02787 533 SMART WRKY_cls 385 444 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 SMART WRKY_cls 209 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 ProSiteProfiles WRKY domain profile. 380 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 MobiDBLite consensus disorder prediction 441 462 - -
Cme06g02787 533 MobiDBLite consensus disorder prediction 157 211 - -
Cme06g02787 533 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 10 527 - -
Cme06g02787 533 MobiDBLite consensus disorder prediction 118 141 - -
Cme06g02787 533 SUPERFAMILY WRKY DNA-binding domain 377 445 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 MobiDBLite consensus disorder prediction 272 299 - -
Cme06g02787 533 ProSiteProfiles WRKY domain profile. 204 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 Gene3D WRKY domain 372 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 SUPERFAMILY WRKY DNA-binding domain 206 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 Pfam WRKY DNA -binding domain 386 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 Pfam WRKY DNA -binding domain 210 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 MobiDBLite consensus disorder prediction 259 299 - -
Cme06g02787 533 Gene3D WRKY domain 203 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g02787 533 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 527 IPR044810 GO:0003700
Cme06g02787 533 MobiDBLite consensus disorder prediction 448 462 - -
Cme06g02787 533 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00537 Cme-Chr1:4022838 Cme06g02787 Cme-Chr6:35108962 6.74E-77 dispersed
Cme06g02711 Cme-Chr6:34310802 Cme06g02787 Cme-Chr6:35108962 9.64E-102 dispersed
Cme06g02787 Cme-Chr6:35108962 Cme10g00381 Cme-Chr10:2444550 2.56E-15 dispersed
Cme06g02787 Cme-Chr6:35108962 Cme09g00236 Cme-Chr9:1797171 3.35E-18 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41579 PF03106 WRKY 3.00E-25 CL0274 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02787 - - csv:101219838 1052.74