Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme06g02818 | ATGGCACCTTCTGATTTATGGATAAAGGAATATAATGAAGCTTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCTTTCCTGCAACTGGACCAGAATCCCAACGTCACGCTTCGGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTACAGTCCCTTTTGTCGAAACTTCCTGTAAAGCAGCCCCTGTCCGAAAAGGAGATAAATCGACGTAAAGACATGCTCATTCAGATGAGATCAGAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACCGAGACAGTTTGCTAGGCCCAGAGATGAAATCGGTGGATGTAATGAGCAAGACAGCTGAACTAGACAATCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCATTAGCGGTCAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGATCAACATGTTGATGTTATAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGGAATAATGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGAATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATCACTGTCATATGGCTGCTCCAATACTTGTAA | 672 | 42.86 | MAPSDLWIKEYNEASKLGDDINGMISERSSFPATGPESQRHASAIRRKITILGTKVDGLQSLLSKLPVKQPLSEKEINRRKDMLIQMRSEVKQMASTLNMSNFANRDSLLGPEMKSVDVMSKTAELDNQGLVEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVIDSRLARVQKRLGIMNKRAKGSCSCFGMLLSVVGIVVLITVIWLLQYL | 223 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 35482051 | 35484501 | + | MELO3C014154.2.1 | Cme06g02818 | 331967 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme06g02818 | 223 | Gene3D | - | 130 | 192 | - | - | |
| Cme06g02818 | 223 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 128 | 190 | IPR000727 | - | |
| Cme06g02818 | 223 | PANTHER | SYNTAXIN | 1 | 219 | IPR045242 | - | |
| Cme06g02818 | 223 | Pfam | SNARE domain | 165 | 216 | IPR000727 | - | |
| Cme06g02818 | 223 | CDD | SNARE_SYN8 | 131 | 195 | - | - | |
| Cme06g02818 | 223 | SUPERFAMILY | SNARE fusion complex | 127 | 190 | - | - | |
| Cme06g02818 | 223 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 219 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00994 | Cme-Chr1:11894476 | Cme06g02818 | Cme-Chr6:35482051 | 7.43E-118 | dispersed | |
| Cme06g02818 | Cme-Chr6:35482051 | Cme11g02501 | Cme-Chr11:31571696 | 1.07E-07 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme06g02818 | K08503 | - | csv:101223140 | 405.986 |