Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02820 ATGGCAACTTTTCACCTCACAAATCTATCTTCTTCTTCTTCTTCTTCACTTCACCCTCAATTTCATCATAAGACATCCTTCTTTCCCTCCAATTTTCCCTGGACTTGTTCCTCTTCTAATGCCAAGCGGAAATTCCCGTCTCGGAGACACCATCTTGCTGTTGTGGGCTGCTCATTTTCCCCTATGGAGTCCGCTAAGATTAAGGTTGTGGGAGTTGGTGGTGGCGGCAACAATGCCGTTAATCGCATGATTGGCAGTGGTTTGAAGGGTGTTGATTTCTATGCTATAAATACGGATTCTCAAGCTCTACTACAGTCTGCTGCTGAGAATCCACTTCAAATTGGAGAGCTTCTGACGCGTGGTCTAGGTACTGGCGGGAATCCACTTTTAGGAGAACAAGCGGCAGAAGAATCAAAGGAAGCAATAGCTGGTGCTCTCAAGGGCTCTGATCTTGTGTTTATAACGGCTGGTATGGGTGGAGGCACTGGGTCTGGTGCAGCCCCTGTTGTTGCCCAGATTTCCAAGGAGGCCGGTTACCTTACTGTTGGTGTTGTTACTTTTCCATTCAGTTTTGAGGGAAGAAAACGATCCTTGCAGGCACTGGAGGCCATTGAAAAGTTGCAGAAAAATGTTGACACTCTTATAGTGATCCCCAATGATCGGTTGCTTGACATTGCCGATGAACAGACACCTCTTCAAGATGCTTTCCTTCTTGCTGATGATGTCCTACGTCAAGGAGTGCAAGGAATTTCTGATATAATTACGATTCCAGGGCTGGTCAACGTGGATTTTGCTGACGTGAAAGCCGTTATGAAAGACTCGGGAACTGCAATGCTCGGAGTTGGTGTTTCCTCTAGCAAAAACCGTGCAGAAGAAGCAGCTGAGCAAGCAACGTTGGCCCCTTTGATTGGATCCTCAATTCAGTCAGCTACAGGTGTAGTTTATAACATCACTGGAGGAAAAGACATAACTTTACAGGAAGTGAACAGAGTGTCTCAGGTTGTGACAAGTTTGGCAGATCCATCAGCAAACATAATATTTGGAGCAGTTGTGGATGATAGGTACAGTGGAGAAATCCATGTAACTATAATTGCAACCGGGTTCTCTCAATCCTTTCAGAAGACATTGTTGGCTGATCCCAGGGCATCAAAACTTATTGATAAAGTGAGTGGAGGAGGTCAAGAAAAAAGTAGCAAGGCTTCTTCAACCCTTCCTCTTAACTTATCACCTGCCGCTTCACCGGCAGTTCCTAATCGAGGTCGAAGGCTCTTCTTTTAG 1278 45.62 MATFHLTNLSSSSSSSLHPQFHHKTSFFPSNFPWTCSSSNAKRKFPSRRHHLAVVGCSFSPMESAKIKVVGVGGGGNNAVNRMIGSGLKGVDFYAINTDSQALLQSAAENPLQIGELLTRGLGTGGNPLLGEQAAEESKEAIAGALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTFPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYSGEIHVTIIATGFSQSFQKTLLADPRASKLIDKVSGGGQEKSSKASSTLPLNLSPAASPAVPNRGRRLFF 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35492818 35497221 - MELO3C014156.2.1 Cme06g02820 331969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02820 425 TIGRFAM ftsZ: cell division protein FtsZ 61 375 IPR000158 GO:0003924|GO:0005525
Cme06g02820 425 PRINTS Cell division protein FtsZ signature 151 171 IPR003008 GO:0005525
Cme06g02820 425 PRINTS Cell division protein FtsZ signature 179 200 IPR003008 GO:0005525
Cme06g02820 425 PRINTS Cell division protein FtsZ signature 242 264 IPR003008 GO:0005525
Cme06g02820 425 PRINTS Cell division protein FtsZ signature 265 286 IPR003008 GO:0005525
Cme06g02820 425 SUPERFAMILY Tubulin nucleotide-binding domain-like 65 261 IPR036525 -
Cme06g02820 425 MobiDBLite consensus disorder prediction 388 415 - -
Cme06g02820 425 Hamap Cell division protein FtsZ [ftsZ]. 62 391 IPR000158 GO:0003924|GO:0005525
Cme06g02820 425 Gene3D Tubulin/FtsZ, GTPase domain 59 273 IPR036525 -
Cme06g02820 425 CDD FtsZ_type1 82 367 IPR000158 GO:0003924|GO:0005525
Cme06g02820 425 Pfam FtsZ family, C-terminal domain 275 368 IPR024757 -
Cme06g02820 425 SMART Tubulin_4 66 258 IPR003008 GO:0005525
Cme06g02820 425 MobiDBLite consensus disorder prediction 394 409 - -
Cme06g02820 425 ProSitePatterns FtsZ protein signature 1. 97 131 IPR020805 GO:0005525
Cme06g02820 425 PANTHER BNAA02G09160D PROTEIN 9 425 - -
Cme06g02820 425 Gene3D - 274 379 IPR037103 -
Cme06g02820 425 Pfam Tubulin/FtsZ family, GTPase domain 66 226 IPR003008 GO:0005525
Cme06g02820 425 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 9 425 IPR045061 GO:0003924|GO:0005525
Cme06g02820 425 SMART Tubulin_C_4 260 377 IPR018316 -
Cme06g02820 425 ProSitePatterns FtsZ protein signature 2. 150 171 IPR020805 GO:0005525
Cme06g02820 425 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 159 165 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cme06g02820 425 SUPERFAMILY Tubulin C-terminal domain-like 260 375 IPR008280 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02820 K03531 ftsZ; cell division protein FtsZ - csv:101222908 759.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02401 Cme-Chr4:30686113 Cme06g02820 Cme-Chr6:35492818 2.12E-108 dispersed
Cme06g02820 Cme-Chr6:35492818 Cme08g01199 Cme-Chr8:8462742 1.20E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37