Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02834 TCTTACTTACCTTTCAATTTTCAATTTTTCAAATTCCCCTCTTCCCCCTTCTCCTTCTCTTCACCTGCCACCTCCTTTTCCTCATCTGGGTCTTTTCCCATGGCCGAATCCATGGAGGAAACCGCCCTTGTTGATGTCCAACCCGCTCTCCCCCCCTCCGACAAGAGACCCATTGAGATTCATGACGACAATCAACCTGCGGAGCCTCAATCGAGGAAGAAACCTCGGAATGGTTGCGACTTGGGTCCGAATCTTAGAAGGGTAGCTGAGATTGTGTTGGTTATGTCGACCATGACGGCTTTGCGTGGTGGGAAGAAACCCAGTGATGCTGAGGTTGGATTAATGGCTGAAGCTAGGGCTAAGTTGGTTAGGATTTGTGAAGGATTGGCTCCGAAGGATATTGTGGGAAGGGAGGGTATTAGTTCTTTGATTGAAGATTTGGGGCTCCATGGTAGTGATCAGAAGTTAGGGTTTCGAGGTCCTAGGTTGACGATAGCAGAGAAGTTGGCACAGTCGAAGAAGAAGATGGAAGATTCCAAGAAATATGTCGCACCTCCGAGTTATGGATCCCATACAACCCAAAAAAGTTCCAGTTCATCAGTTGAGAGCCGTGGGCCATTGCCTACAGTAAGGATGTTTCCCTCAGAAAAATCAGGTCCCGTTCCAGCTTCTGTGGGAGGTACTGCAGGTACTCTGCCTTCAGGTCATAGTTCTGTCACTGGTCCTACATCTATACAGGTTCAGGCGCAAATACCGAGCAATGAAGTTAGATCACATATTATTTCAAGTGGATATTCTATTGGTCATCAAGGAATGGGTTCTTCTTCACTCTTGCATGGCACTGAAAAACCATTAAATGGGGCATATGGATCTCAAATGCAAGTTAACTCTTTGGCAAATCATCCTCTGGCGAGTGCTCCAACATGGTCTGCTCAAACTCAATCCGCTTTGGCAGCTAAAGGTGGGCCAGAGCACAAGTTTCCCAATCATTCTGCTGTTAATGCTCAGGGAACCACAGACTCAAGAGCATTAAGATCGTCTTCTCAAGCTGCAAGGGACCAGAGCTTTAGACCTCCTATTTCTCAAACTGGGACAGGAAATACTACTGGTTTGCATACGCCTTTACAGAACATGAATTTTGTGCAAGGACCTTCACTTTCTAATAACCACAATGAAATTGTCAAAATTATTCAGAAGCTCTTACAGCCACAACTGCCCGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATTAATGAGATTGATACTGTACTTATATGTGATGCTTGTGAGAAAGGATATCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGCGAATGGCACTGCCCAAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAATCCGCCGCCAAAATTATCGGTCAATACCAGTGGAACTCAGCCACTAGAGAAGAAATCAGGAGCCATAGAACAGAAGGTCAGTGCTGGTCAGTTGAAGTTAGTTTCTAATGGAGGTTCAGATTTGCCAACTCCTCAGCCTGCTGACTATGGAAGCAATGCCAATGAATCACCTGGTCTCAAACTTCCAAATGTGGAAGAGATTCATGGAAATAATTTTTTACCAATTAGGAAAGACATAGATGAGAAACCAATACCAACTTCACCAACTTCCTTGAATACCCCAGCCAAATCCTTGGGGCTGGTTTGTGAACCCTCTTCTGGTGAGTTATCAAGTGAAACATTTGCTCAGCCCATTAAAAGTTCTCAAGCATCAATAGGTGATGATAAATCCTCAACAAAAGCAGAGCCTCCAGAAGAATCCCAAACAATGGCTGATAATTCTAGTATTCCTAAACCCCCTGACATTCCTCGAATTGTTTATCAGAAAATGGTTTCTGAAGGCCCCGAAATACCCTCCTCAACAGCAAGTGCTCATGATACTTCAAACGTGAAGAAAGATGGCCATGAAGTTCTGCAGGAGAATAATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGCCCGGTGCTTCTTCCAATGACTTGCATAACGTTGAATGGATTGGAGACCAATATCAGATTTTAGATAGGAGGGCATATTACAAATCCTGTAGAGTTGATGGTGCGACATATAAAGTTGAAGAATTTGCTCTTTTTCAATCCAGCAACGGGAAATTGATGCCCTATAGGCTTCATTCCTTCAGCCATGAATATGAAAGTGGGTTGAAATGGGCTATTCTTAAGAAGTGTTACTTTTATGAGGACTTGCCAAAGGAAGTTGCCCATCTCTGCCCGTGCTCCCCTGAAGAACATGAGGTATATACATCCGATGGCTATATTTGTTTAGATCTGGGCTTAATTCGAGGACCATGTGAAGTTCTTTCTGTTGCCAAGTATAAAGAAGAACTTGAAAGACGAAAACAATTGGGTCCTGGGGAAGATAATGGAATAAAGCCAATTTTCCTGTGCAAGTACGTCGATTTCCTTGGACAATTCTCTAATCCATTTGTTGCTTTTGGAGACCGATATCAAGCACTTCTCCTTTATTGA 2625 43.43 SYLPFNFQFFKFPSSPFSFSSPATSFSSSGSFPMAESMEETALVDVQPALPPSDKRPIEIHDDNQPAEPQSRKKPRNGCDLGPNLRRVAEIVLVMSTMTALRGGKKPSDAEVGLMAEARAKLVRICEGLAPKDIVGREGISSLIEDLGLHGSDQKLGFRGPRLTIAEKLAQSKKKMEDSKKYVAPPSYGSHTTQKSSSSSVESRGPLPTVRMFPSEKSGPVPASVGGTAGTLPSGHSSVTGPTSIQVQAQIPSNEVRSHIISSGYSIGHQGMGSSSLLHGTEKPLNGAYGSQMQVNSLANHPLASAPTWSAQTQSALAAKGGPEHKFPNHSAVNAQGTTDSRALRSSSQAARDQSFRPPISQTGTGNTTGLHTPLQNMNFVQGPSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDTVLICDACEKGYHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTQPLEKKSGAIEQKVSAGQLKLVSNGGSDLPTPQPADYGSNANESPGLKLPNVEEIHGNNFLPIRKDIDEKPIPTSPTSLNTPAKSLGLVCEPSSGELSSETFAQPIKSSQASIGDDKSSTKAEPPEESQTMADNSSIPKPPDIPRIVYQKMVSEGPEIPSSTASAHDTSNVKKDGHEVLQENNVENFEASIINREQPGASSNDLHNVEWIGDQYQILDRRAYYKSCRVDGATYKVEEFALFQSSNGKLMPYRLHSFSHEYESGLKWAILKKCYFYEDLPKEVAHLCPCSPEEHEVYTSDGYICLDLGLIRGPCEVLSVAKYKEELERRKQLGPGEDNGIKPIFLCKYVDFLGQFSNPFVAFGDRYQALLLY 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35801244 35806869 - MELO3C014171.2.1 Cme06g02834 331983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02834 874 MobiDBLite consensus disorder prediction 186 205 - -
Cme06g02834 874 MobiDBLite consensus disorder prediction 55 75 - -
Cme06g02834 874 MobiDBLite consensus disorder prediction 524 549 - -
Cme06g02834 874 MobiDBLite consensus disorder prediction 331 367 - -
Cme06g02834 874 ProSitePatterns Zinc finger PHD-type signature. 425 471 IPR019786 -
Cme06g02834 874 MobiDBLite consensus disorder prediction 48 82 - -
Cme06g02834 874 MobiDBLite consensus disorder prediction 174 241 - -
Cme06g02834 874 SUPERFAMILY FYVE/PHD zinc finger 415 481 IPR011011 -
Cme06g02834 874 MobiDBLite consensus disorder prediction 595 620 - -
Cme06g02834 874 Pfam PHD-finger 425 472 IPR019787 -
Cme06g02834 874 MobiDBLite consensus disorder prediction 314 367 - -
Cme06g02834 874 Gene3D - 713 852 IPR043151 -
Cme06g02834 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 486 IPR013083 -
Cme06g02834 874 MobiDBLite consensus disorder prediction 524 646 - -
Cme06g02834 874 MobiDBLite consensus disorder prediction 493 508 - -
Cme06g02834 874 MobiDBLite consensus disorder prediction 479 510 - -
Cme06g02834 874 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 35 852 - -
Cme06g02834 874 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 35 852 - -
Cme06g02834 874 SMART PHD_3 424 472 IPR001965 -
Cme06g02834 874 ProSiteProfiles Zinc finger PHD-type profile. 422 474 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02834 - - - csv:101222588 1514.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02834 Cme-Chr6:35801244 Cme08g00028 Cme-Chr8:224292 8.71E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41581 PF00628 PHD 2.60E-08 CL0390 Cme TR