Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02844 ATGGTGGCTTCCAGTTTTTCCTCTTCACGGACCTCACCCTCTCTCTCTCTCTTCATCTCTCTCTCTCTCTCTTCCATTGATTTTCAATCTCCCATTTCTCCAACTCTCCACAATCTCTCTCCACTTTCCCATCATTTTTCCTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTATTAAATCCGTTATGAGGAGAGGGAGAGGGCCGCCCGTTGTACCACCCCCGCGTGAACCACCACCACCACCACCACCAGCAACCACCGGATCCGACCGGAGATATAGAGGTGTTAGAAAAAGGCCATGGGGAAGATTCGCGGCAGAGATCAGAGATCCATGGAAGAAGACCAGAGTCTGGTTAGGCACCTTCGATTCCGCAGAAGACGCCGCCCGTGCTTACGACAACGCTGCCATAACCCTCCGTGGCTCTAAAGCTAAAACCAATTTTCCCCTTCCCAATCCCACCTCCTTTTTCGATTATCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATCCCCGATTTCAGATTAGACCTACTTCCAGTAGTTTGAGTTCCACCGTTGAATCCTTCAGCGGTCCTCGCCCTCCCTCCTCCCTTCCCACCCTTACTACCACTTCTCCCTCTCGTCGTTACCCTCGTACTCCCCCACTTCTCCCTGAGGATTGCCATAGCGATTGCGATTCATCTTCCTCCGTTATTGACGACGGCGACGACATCGCTTCCTCCCCCGTCGTTCCTCGGAAAAAAACCCCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTTTTGATTTTAGCGGCGATGATCTTCGATGTACTGCTTTGTGCCTTTGA 837 50.66 MVASSFSSSRTSPSLSLFISLSLSSIDFQSPISPTLHNLSPLSHHFSFLFFSFFFFFIKSVMRRGRGPPVVPPPREPPPPPPPATTGSDRRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGSKAKTNFPLPNPTSFFDYPPHPVNAPDPFPDPRFQIRPTSSSLSSTVESFSGPRPPSSLPTLTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSPVVPRKKTPLPFDLNIPPSDLFDFSGDDLRCTALCL 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35914585 35915669 - MELO3C014181.2.1 Cme06g02844 331993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02844 278 MobiDBLite consensus disorder prediction 67 92 - -
Cme06g02844 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 87 244 - -
Cme06g02844 278 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Cme06g02844 278 CDD AP2 91 148 IPR001471 GO:0003700|GO:0006355
Cme06g02844 278 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Cme06g02844 278 MobiDBLite consensus disorder prediction 175 211 - -
Cme06g02844 278 MobiDBLite consensus disorder prediction 153 173 - -
Cme06g02844 278 Gene3D AP2/ERF domain 90 149 IPR036955 GO:0003700|GO:0006355
Cme06g02844 278 MobiDBLite consensus disorder prediction 67 86 - -
Cme06g02844 278 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Cme06g02844 278 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Cme06g02844 278 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Cme06g02844 278 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 87 244 - -
Cme06g02844 278 MobiDBLite consensus disorder prediction 151 252 - -
Cme06g02844 278 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00324 Cme-Chr5:2379675 Cme06g02844 Cme-Chr6:35914585 4.07E-44 dispersed
Cme06g02844 Cme-Chr6:35914585 Cme07g00574 Cme-Chr7:4927492 2.18E-28 dispersed
Cme06g02844 Cme-Chr6:35914585 Cme11g01515 Cme-Chr11:22406414 1.30E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41582 PF00847 AP2 1.10E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02844 K09286 - csv:101219993 332.028