Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02850 ATGGCCTCAACTACTGGTGAATCTTCTCGTATTCTTCACGAGATTGAGACCTTGAAATCTGCCAAGTCCGACTTAGAACGTCGTATTTCAGCTCTTGAATCGCAGCTACACAACCTCAATCAACCCCACAACAATGGTGTTTCTAATGCCTCTTCCACTTCACCATCCACCTTTCCTCATGGTCTCTCCCCTGATATGATTTACAGATACAGTCGCCATCTCCTTCTTCCTTCCTTCGGAGTCCAAGGACAATTGAGGCTTTCTAAGTCTTCTGTTTTAGTTGTTGGAGCGGGAGGATTGGGCTCGCCAGCTTTATTGTATCTTGCAGCTTCTGGTGTTGGTCGTCTGGGAATTGTTGACCACGATGTAGTTGAGCTAAATAACATGCATCGGCAGATCATCCATACCGAGGCATATATTGGCCGGTCAAAAGTAGAATCTGCTGCTGCTACATGTCGATCGATCAACTCTACTGTCCAGATCGTTGAGCACAAAGAAGCTCTTCGCACATCAAACGCTTTAGAAATCTTTAGCAAATACGATATTATAGTAGATGCCACAGATAATGCTCCAAGCCGGTACATGATTAGTGATTGTTGTGTGGTTCTGGGAAAGCCTCTTGTGTCTGGTGCAGCTCTTGGTTTGGAGGGGCAGCTCACAGTTTACAATTACAATGGAGGCCCGTGCTACCGATGCCTGTTTCCAACTCCGCCACCAACAACAGCGTGCCAAAGGTGTGCTGACAGTGGTGTTCTAGGAGTAGTTCCTGGGATCATTGGTTGTCTCCAAGCCTTGGAGGCCATAAAAATTGCAAGTGCGGTTGGTGATCCACTTTCAGGACGGATGCTTCTGTTTGATGCGTTAGCAGCGAGGATCAGAATTGTCAAGATTCGTGGAAGGTCGGTGCAATGTGAAGTATGTGGAGAAAATTCTGAATTCAAAGCAGCACAATTTCAAGAATTTGACTATGAAAAGTTCACTCAGTCTCCATTATCTACGTCTCCTCTGAAGTTAAAACTACTAGAGCCAAACTCAAGAATAAGCGCCAGAGAATACAGAGACCGACTTCATAGCAACGAATCACACGTGCTTGTGGATGTCCGTCCCGAGCACCATTTCAAGATTGTTTCTCTTCCCAACTCCCTTAACATCCCGCTGGCGAGTTTGGACGGAAGGATGGAAGAAGTGGTATCAGCATTGAAGGAAGAGGAGCATAAACATAAACAGAAGTCAAAGTCGTCCTCCAATGGCGATGTTGAATTATACGTTGTTTGTAGGAGAGGGAATGATTCTCAAAGAGCCGTGAAGTACCTCCAAGAGAATGGGTACCCTTCAGCTAAGGATATCATTGGTGGATTGGAGGGTTGGGCCCAGGAGGTAGACCCCACTTTCCCTTCCTATTAA 1404 46.01 MASTTGESSRILHEIETLKSAKSDLERRISALESQLHNLNQPHNNGVSNASSTSPSTFPHGLSPDMIYRYSRHLLLPSFGVQGQLRLSKSSVLVVGAGGLGSPALLYLAASGVGRLGIVDHDVVELNNMHRQIIHTEAYIGRSKVESAAATCRSINSTVQIVEHKEALRTSNALEIFSKYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIASAVGDPLSGRMLLFDALAARIRIVKIRGRSVQCEVCGENSEFKAAQFQEFDYEKFTQSPLSTSPLKLKLLEPNSRISAREYRDRLHSNESHVLVDVRPEHHFKIVSLPNSLNIPLASLDGRMEEVVSALKEEEHKHKQKSKSSSNGDVELYVVCRRGNDSQRAVKYLQENGYPSAKDIIGGLEGWAQEVDPTFPSY 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35963141 35974709 + MELO3C014186.2.1 Cme06g02850 331999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02850 467 SMART rhod_4 348 462 IPR001763 -
Cme06g02850 467 Gene3D - 64 313 - -
Cme06g02850 467 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 32 467 IPR028885 GO:0002143|GO:0004792|GO:0005829
Cme06g02850 467 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 5 452 IPR045886 -
Cme06g02850 467 Pfam ThiF family 70 305 IPR000594 -
Cme06g02850 467 MobiDBLite consensus disorder prediction 38 58 - -
Cme06g02850 467 Coils Coil 15 42 - -
Cme06g02850 467 Gene3D - 345 467 IPR036873 -
Cme06g02850 467 Pfam Rhodanese-like domain 348 458 IPR001763 -
Cme06g02850 467 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 61 434 IPR035985 GO:0008641
Cme06g02850 467 CDD ThiF_MoeB_HesA_family 69 297 - -
Cme06g02850 467 PANTHER ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 5 452 - -
Cme06g02850 467 ProSiteProfiles Rhodanese domain profile. 358 465 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02850 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - csv:101220467 824.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00282 Cme-Chr6:1717354 Cme06g02850 Cme-Chr6:35963141 9.76E-12 dispersed
Cme06g02850 Cme-Chr6:35963141 Cme11g00143 Cme-Chr11:1449739 9.20E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g01293 . 59 322 Sulfurtransferasese/Rhodanese AT1G79230 76.5 1.5e-120 429.5
Cme06g01293 . 59 324 Sulfurtransferasese/Rhodanese AT1G16460 74.4 2.1e-115 412.1
Cme12g01908 . 36 324 Sulfurtransferasese/Rhodanese AT5G23060 61.1 3.6e-82 302.0
Cme06g00108 . 1 442 Sulfurtransferasese/Rhodanese AT4G01050 53.0 4.0e-115 412.1
Cme12g00775 . 5 601 Sulfurtransferasese/Rhodanese AT1G09280 64.3 2.1e-224 775.4
Cme10g01270 . 3 329 Sulfurtransferasese/Rhodanese AT2G40760 61.6 7.6e-116 414.5
Cme04g02001 . 84 428 Sulfurtransferasese/Rhodanese AT1G17850 65.0 4.9e-141 498.0
Cme08g01733 . 41 218 Sulfurtransferasese/Rhodanese AT2G42220 69.1 7.1e-67 250.8
Cme02g02022 . 1 295 Sulfurtransferasese/Rhodanese AT4G24750 67.0 9.1e-112 400.2
Cme05g00202 . 67 259 Sulfurtransferasese/Rhodanese AT5G19370 61.1 1.8e-67 253.1
Cme06g02850 . 113 467 Sulfurtransferasese/Rhodanese AT5G55130 71.0 2.2e-147 518.8
Cme06g01169 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.0 2.3e-78 288.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31