Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02859 ATGATTCCATTTTTTCTTTTCTTTTCATTTCTTTTCTTTATTTATTTTTTTTGGTTGAGGAACTCCATGACAGCAATTGAGCGCAAACTATCCTATAAGTTTAAGAACAAGAAGCTGTTAGAAGTAGCCCTCACCCACTCCTCCTACCCCAACACTGCCTCCTATGACCGCCTCGAGTTCATCGGCGATTCTGCTATTGGCCTCGCTATTTCCAATTACTTTTTCTCCCTTTATCCGGACCTTGATCAAGGCCGACTCACTTTACTTAGGGCTGCTAACGTTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCTCCATGGATTGTATGATTATGTTAGGCGCAGCGCAGCCGATCTCGATGATAACGTTAGAGAGTTTGCCGATGCCGTCGCTCTAGAAGACAACTCAATTCCCTATGGTGGGTTGAAAAAGGCTCCTAAAGTTCTTGCTGACATTGTGGAATCTGTGGCCGGTGCTATCTATGTTGATGTTGAGTTTGATCTTCAAAAACTATGGGCGATTATTAAGGATTTGTTAAAGCCTATCTATACTCCTGAAGACTTAGAGGCAGAGCCCCAACCCGTAACTCTGCTCTTTGAAGTTTGCCAAAAAAATGGGAAGCAGGTTGTTATTAAGAATCAGGAAAAGGGTTCCTGGAACGTCGCGAGGGTCTATGTTGACCGTACGCTTGTTGCTTCTGGCTCTTCGAAGCAAAAACCAATCGCAAGACTTAATGCTGCCAGACAAGCTCTTATCATATTGTCTGATTCTATGGATACCAAAATTAAAACGGTTGTAACTATTGATGGTATTGATGGTTCGTTTGAAATTGAAGGGGCAACGCAGAAGCTACATGATTTTTGTTCCAGGAAAAAGTGGCAGAATCCAAGTTACAGTGTTGAGGAAGTTCTTGGACGCCCACATGAAAGAAGGTTTGTTTGCTCTGTTAAAATTTCCACTTATGATGATACGCACTCTATTATCGGAGATGAGAAGTCAAGAGTAAAAGAGGCAAAGAACTCTGCAGCCTCTTTGATGATTCGTAATTTACAGGAAAGGAAGTATCTCAAATTTATACCTTATTCAATAGGGCAGAATCTAGCATAA 1107 41.92 MIPFFLFFSFLFFIYFFWLRNSMTAIERKLSYKFKNKKLLEVALTHSSYPNTASYDRLEFIGDSAIGLAISNYFFSLYPDLDQGRLTLLRAANVSTEKLARVAVLHGLYDYVRRSAADLDDNVREFADAVALEDNSIPYGGLKKAPKVLADIVESVAGAIYVDVEFDLQKLWAIIKDLLKPIYTPEDLEAEPQPVTLLFEVCQKNGKQVVIKNQEKGSWNVARVYVDRTLVASGSSKQKPIARLNAARQALIILSDSMDTKIKTVVTIDGIDGSFEIEGATQKLHDFCSRKKWQNPSYSVEEVLGRPHERRFVCSVKISTYDDTHSIIGDEKSRVKEAKNSAASLMIRNLQERKYLKFIPYSIGQNLA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36021975 36025792 - MELO3C014193.2.1 Cme06g02859 332008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02859 368 Gene3D - 190 265 - -
Cme06g02859 368 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 279 352 IPR014720 -
Cme06g02859 368 Pfam Ribonuclease III domain 56 163 IPR000999 GO:0004525|GO:0006396
Cme06g02859 368 PANTHER DICER-RELATED 24 347 - -
Cme06g02859 368 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 279 351 - -
Cme06g02859 368 CDD RIBOc 38 188 IPR000999 GO:0004525|GO:0006396
Cme06g02859 368 Pfam Double-stranded RNA binding motif 194 252 IPR014720 -
Cme06g02859 368 CDD DSRM_SF 285 347 - -
Cme06g02859 368 SMART riboneu5 38 188 IPR000999 GO:0004525|GO:0006396
Cme06g02859 368 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 24 347 - -
Cme06g02859 368 SMART DRBM_3 194 255 IPR014720 -
Cme06g02859 368 SMART DRBM_3 280 351 IPR014720 -
Cme06g02859 368 ProSiteProfiles Ribonuclease III family domain profile. 23 165 IPR000999 GO:0004525|GO:0006396
Cme06g02859 368 SUPERFAMILY dsRNA-binding domain-like 281 359 - -
Cme06g02859 368 SUPERFAMILY RNase III domain-like 22 186 IPR036389 GO:0004525|GO:0006396
Cme06g02859 368 SUPERFAMILY dsRNA-binding domain-like 147 254 - -
Cme06g02859 368 Gene3D - 280 353 - -
Cme06g02859 368 Gene3D Ribonuclease III domain 18 189 IPR036389 GO:0004525|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02859 - - - cmo:103491098 678.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01379 Cme-Chr3:23281080 Cme06g02859 Cme-Chr6:36021975 1.48E-32 dispersed
Cme06g02859 Cme-Chr6:36021975 Cme06g02860 Cme-Chr6:36028052 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42