Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00008 ATGGAAGAGATTGCGTTAGAAAAAGAACACGAAGGAGAATCGGAGACCTCTTGTATTACAGCAAGACAATTGCAAGAAGCAGTTGATGCTCATCCTGACGATCCCTCGTCCCATTTCAAACTCGGGATTTTCATGTGGGAAAATGGAGCAAGCCACGATAAGGCGGCTGCCGCTGATCATTTTCTGAAATCAGCGAAATTAGACCCTGAGAATGCTGCCGCTTTCAAGTATCTAGGGGATTATTACGCCACATTTTCTGTCGATGTCCAAAGGGCTCTCAAGTGCTACCAAAGAGCTGTCAGTCTCGACGTCGACGATTTCCACTCTGGAGAAGCATTGTGCGATCTGTTGCATCACGAAGGAAAGGAGAGTATAGAGGTTGCTGTATGCAAAGAGGCTTCCTCTAAGTCACCCAAGGCCTTCTGGGCTTTCCGGAGGTTGGGATATTTGCAGGTTTATCAAAATAAATGGACTGAAGCTGTTTCAAGTCTTCAGCATGCCATTCGAGGATATCCTCATTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCATATCAGCGACTTGGCAGGTTTACTGCTGCAACTAAGTCTTATGCACGGGCTATTGAAATTGAAGGAGAGAGAATCCTTGCTTGGGTTGAGAGTGGAAACATCTTCTTGATGCTCGGTTTGTTCAAAAAAGGAGTTGAACACTTTCAGCAAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTTCTTGGTTGGGCGAAGGAATACATTAATAGGGGGGCATTTAAATGGGCATCCTTTCTATTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACTCATTTAGCTGGAAACTCGTCATGTATCTGGAAGTTGCTTGGAGATATTCAGCACACTTATGCGAAATGTTATCCATGGATGGAAGACTGGGGACAATGCTCAGACTCCTTTAGAACTTCTATCCTTTCCTGGAAGCAGACTCGCATTTTGGCTTTATTTTCTGCCAAATGTTCCTATCAGCAAGCTCTGCACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATAATATTTCATCTTTGAATGATGATTCTGGACCTCGATTCTATTCCTGGCAGATATCTGAAAAGATGACACTAGGGGCCTTGATGCTCGAGGGTGACAATCATGAATTCTGGGTGGCAATGGGATGCATCTCTAACCATGTTGCGTTAAAGCAACATGCTTTTATAAGGGCATTGCAGTTAGATGGATCTTTAGCTGTAGCATGGGCTTATCTTGGGAAGTTATACTGGAATAGGTGCGAAAAGCAATTGGCGAGACAGGCTTTTGATTATGCCAGAAGTATAGATCCTTCTCTAGCATTACCCTGGGCTGGCATGTCGGCTGATTTGAACGTTAGGGAGTCAACATCGGAAGAAGCATTCGAGAGCTGTTTAAGAGCTGCACAAATACTTCCTGTGGCGGAATTCCAAATTGGTCTTGCCAAGCTTTCTCTGCAGGCGGGCCATCTTTCATCTCCACAGGTGTTTGGAGCTATACGTCAGGCTGTTCAACTTGCACCTTGTTACCCTGAATCCTATAATCTAAGTGGACTAGCTTTTGAGGCACAATTAGATTATCAATCTGCTGTTGCTGCTTATCGTTTAGCACACCTCACAATTAGCCACTTTTCAGATAGAGTTCCAAGGTCTCATGTCAGAGATATATCGATCAACTTAGCCAGATCACTCTGCATGGTAGGAAATTTCTTTGAAGCTTTGCAGGAATGTGAAAATTTAAGTAGAGAAGGCATGCTCGACAATGAAGGTTTGCAGGTTTATGCTTTCTCTCTATGGAAACTAGGAAAGAATGACCAGGCCCTTAGCGCTGTGAGAACACTTGCTTCTGGCATCTGTACCATGGAAATCACACGTACTGCTGCATCTATTGGTTTCATATGCAGACTGTTGTGTTCAATATCTGGATTGGATTCCGCAATTAACAGTATTACGAAGATGCCGACCAATTTTTTCCAGAGTTCAAAATTGAGTTTTTTAGTGGCTGCTGTTCATGCCCTTGATCATAGTGATCGGCTTGAGGCCATTGTCTTAAGCAGCCGTTCCTGCCTCCAATCTCATGAAGAGATCACTAGAATGCACAGTTTGATTGCTCTTTCTAAGCTGATCAAATATCGAACAAATAACTGCCTTGGATTCCTCAATGGAGTGATGCATCTTCGAAAAGCTCTTCATGCATACCCCAGCAGTAGTTTGATCAGGAACTTGCTTGGTTATCTTTTGCTGTCCAACGAAGAAAGGGATGACTATCACACAGCTACTAGGTGCTGCAACATGTTGTATGGTTTTGACCAACAGAACAAAGGTCTGAAATCGGCATTTGAAATTCATGGTGCTGGAGCTGTGGCCTGCTATACAATTGGCACGAGTCATCCGAGGTTTACTTTCCCAACATGTTCGTATCAGTGCCAGAATGGGATTGGGACCATCCGTCAACTTCAAAAATGCTTACGTCAAGAGCCGTGGAATTATGATGCTCGATATCTTCTTATACTAAACATTCTGCAGAAGGCACGTGAAGAAAGATTTCCCTGTCATCTATGTGTGACTATTGAGCGGCTAATCTTGATTGCCTTTTCTGATGAACCATATTTTACGAAAGATGTGTCTCATCAATATAAGAAGTTTCAGCTTCTACTTTGTGCCTCTGAGATCAGTTTGCAGGGTGGTGACCAAATTAAATGTATCAACTATGCCAAAGCTGCTTCCTCTATTTCACTTCCTGAAATTTATCTTTTTTATGCACACTTGTTACTGTGCCGAGCCTATGCTGCAGAAAATGATTCTAACAACCTTCGTAAAGAGTTCATAAAATGTTTGGATTTGAAGACAGATAACTATCTTGGATGGGTATGTCTTAAATTCATTGCATCTCGATACGAGCTTCACGATGAATCCAATATCTTAGAACTTAGTTTGAAGAAATGGTCTGTAGAGAGCAAGAGTCTGCAACACATGGTAATGCCCATGTTCGTCGACGGTTTGATATCCTTTGGGAGTCAGGATTTTGTGGCTGCAGAGAAGTATTTTGCACAAGCTTGTTTTTCTGGACATGATGGTTGTCTCCTCCTCTGTCATGGTGTAACCTGCATGGAACTTGCAAGGCAGCTTTGCAGTCCTCATTTTTTGAGGTTGGCTGTGAACAGTCTCCTTAAAGCTCAAGTGATTTCTGTTCCAATACCAATTGTCTCGATCATGCTGGCACAAGCAGAAGGGAGTCTTGGTTTGAAAGAAAATTGGGAGTCAGGCCTTCGTTTGGAATGGTCCTCTTGGCCACCAGATATGAGGTCTGCGGAGATCTTGTTTCAAATGCATCTGCTTGCAAAACAGTCAAAAGTTGTTTCTGATCAATTCAAGGTTGAAATATGTCAGTCTCCTCTGAGATGGGTTCTTCGCGCTATCCATGTAAACCCTTCTTGTGTGAGATACTGGAATGTGCTGCAAAGCTTGTGGAATGAGGGATGA 3552 43.1 MEEIALEKEHEGESETSCITARQLQEAVDAHPDDPSSHFKLGIFMWENGASHDKAAAADHFLKSAKLDPENAAAFKYLGDYYATFSVDVQRALKCYQRAVSLDVDDFHSGEALCDLLHHEGKESIEVAVCKEASSKSPKAFWAFRRLGYLQVYQNKWTEAVSSLQHAIRGYPHCADLWEALGLAYQRLGRFTAATKSYARAIEIEGERILAWVESGNIFLMLGLFKKGVEHFQQALEISPKSITAQFGLSSGLLGWAKEYINRGAFKWASFLLEEASKVARGSTHLAGNSSCIWKLLGDIQHTYAKCYPWMEDWGQCSDSFRTSILSWKQTRILALFSAKCSYQQALHLAPWEANIYTDIAITLDNISSLNDDSGPRFYSWQISEKMTLGALMLEGDNHEFWVAMGCISNHVALKQHAFIRALQLDGSLAVAWAYLGKLYWNRCEKQLARQAFDYARSIDPSLALPWAGMSADLNVRESTSEEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNLSGLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQECENLSREGMLDNEGLQVYAFSLWKLGKNDQALSAVRTLASGICTMEITRTAASIGFICRLLCSISGLDSAINSITKMPTNFFQSSKLSFLVAAVHALDHSDRLEAIVLSSRSCLQSHEEITRMHSLIALSKLIKYRTNNCLGFLNGVMHLRKALHAYPSSSLIRNLLGYLLLSNEERDDYHTATRCCNMLYGFDQQNKGLKSAFEIHGAGAVACYTIGTSHPRFTFPTCSYQCQNGIGTIRQLQKCLRQEPWNYDARYLLILNILQKAREERFPCHLCVTIERLILIAFSDEPYFTKDVSHQYKKFQLLLCASEISLQGGDQIKCINYAKAASSISLPEIYLFYAHLLLCRAYAAENDSNNLRKEFIKCLDLKTDNYLGWVCLKFIASRYELHDESNILELSLKKWSVESKSLQHMVMPMFVDGLISFGSQDFVAAEKYFAQACFSGHDGCLLLCHGVTCMELARQLCSPHFLRLAVNSLLKAQVISVPIPIVSIMLAQAEGSLGLKENWESGLRLEWSSWPPDMRSAEILFQMHLLAKQSKVVSDQFKVEICQSPLRWVLRAIHVNPSCVRYWNVLQSLWNEG 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 94502 112999 - MELO3C017073.2.1 Cme07g00008 332024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00008 1183 SUPERFAMILY TPR-like 531 859 IPR011990 GO:0005515
Cme07g00008 1183 Gene3D Tetratricopeptide repeat domain 20 86 IPR011990 GO:0005515
Cme07g00008 1183 Gene3D Tetratricopeptide repeat domain 386 512 IPR011990 GO:0005515
Cme07g00008 1183 ProSiteProfiles TPR repeat profile. 209 242 IPR019734 GO:0005515
Cme07g00008 1183 Gene3D Tetratricopeptide repeat domain 518 640 IPR011990 GO:0005515
Cme07g00008 1183 Gene3D Tetratricopeptide repeat domain 87 373 IPR011990 GO:0005515
Cme07g00008 1183 ProSiteProfiles TPR repeat profile. 430 463 IPR019734 GO:0005515
Cme07g00008 1183 SMART tpr_5 141 174 IPR019734 GO:0005515
Cme07g00008 1183 SMART tpr_5 209 242 IPR019734 GO:0005515
Cme07g00008 1183 SMART tpr_5 430 463 IPR019734 GO:0005515
Cme07g00008 1183 SMART tpr_5 175 208 IPR019734 GO:0005515
Cme07g00008 1183 SMART tpr_5 72 106 IPR019734 GO:0005515
Cme07g00008 1183 SMART tpr_5 534 567 IPR019734 GO:0005515
Cme07g00008 1183 Pfam Tetratricopeptide repeat 147 201 - -
Cme07g00008 1183 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 10 872 - -
Cme07g00008 1183 SUPERFAMILY TPR-like 22 245 IPR011990 GO:0005515
Cme07g00008 1183 ProSiteProfiles Rhodanese domain profile. 99 166 IPR001763 -
Cme07g00008 1183 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Cme07g00008 1183 PANTHER SUPERKILLER 3 PROTEIN-RELATED 10 872 IPR039226 GO:0006401|GO:0055087
Cme07g00008 1183 SUPERFAMILY TPR-like 181 557 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00008 K12600 SKI3, TTC37; superkiller protein 3 - csv:101220693 2273.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00008 Cme-Chr7:94502 Cme02g00949 Cme-Chr2:13584351 2.29E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g17 . Blo12g00835 . Bda03g00340 . Bpe04g00300 Bma04g00309 . . . . Cma09g00007 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0003 . Csa04g02754 . . . . . . . . . . . . Cmo09g00008 . . . Car09g00007 . . . . . . . . . . . . . . . . . . . Cme07g00008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00008 Cme_Chr07 FPKM 2.554205 3.739324 0.0 0.08839 0.091935 0.0 0.16859 0.0 0.0 0.0