Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00011 ATGTACATACAACTACATTCAATCCATTATCTCCTCTCCACACAATCCAAAATGCTGCATCTTCTTCTGCTATTCATCGTTTTAGTATCTTCTTGTGCAGCAGTTGACACCAAGCCCGGATGCCCTTCCAATTGTGGAAACGTCACCGTTCCCTATCCTTTTGGCATCGGCTTTGGTTGTTACATGGCTACCGGGTTTGACATAACTTGCAATTCTACCTATGATCCTCCATTACCATTCTTAGGCACTTCTAACCTTCAAGTTGAGGAAATTTCTGAAGCTAAGCTCCGCATACGCAACTTTGTTTCTTTCAAATGCTACACTCCAACTGGGGCTCTCACCCGGTCAATCGCGTCTTGGATCAACTTGGGCAACCTCCCTCTGTTCTTCTCCACCACCAACAAGTTCACCGCCATCGGCTGCGACACCATGGCCTTGATCACTGGTTCTGAGGGGCTTTCCTACACCAGTGGATGCGTCTCCCTTTGCTCCAACAAGGAAACCGTGATCAATGGCTCCTGTTCTGGCATTGGGTGCTGTCAGACTGACGTCCCCAGAGGCCTGAAGCGCTTTCAGAGCGCGATTGGGAACCTTAACAACCATACCAAAACCTGGCAATACAATCCTTGCAGCTACGCCTTTCTGGTTGACCAAGACCGCTACACCTTCCGGGTTTCTGATCTTGCAGATCCCAACTTTATATCCACCATTCAAAGCGTGCCAGTGGTTCTGGATTGGGTGGTGGGTAGCACGACATGTGAAGAGGCTCGGAAAGGATTGTCAACTTACGTTTGTCAGGCCAATTCTGAATGCTACGATTCAGAGAGCGGAAGCGGTTATCAATGTCGATGCAGAAGAGGTTTCAGTGGGAACCCATATCTGAGTTCTGGATGCCAAGACATTGACGAGTGTGCAGGCCCCAACAACCCTTGCGAGGGCATATGCGTGAATACCCCTGGCAGTTATTACTGCTTATGTCCCCACGGTTCTTACGGTGATGGTAAGAAGGAGGGCAAGGGTTGTATTAACAAAACCAAGCAATTTCCACTTATTCAACTCACTCTTGGTCTTGCCTCCACTCTTCTCTTTGTCGTCGTCACAGCCACTTGGCTTTACTTCTCCATCAAGAAGAGGAATCTCATTAGACTCCGAGAGAAATTCTTCCACCAAAACGGGGGATTCTTACTGCGCCAGCAGTTATCCCAACACGACGTTGCCGTTGACTCCACAAAAATCTTCACCGCAGAGGAGCTGGAGAAAGCGACGGACAATTATGCTGAGACTCGTATTCTGGGCAGGGGTGGAAACGGAACTGTGTACAAAGGAATTCTGCCTGACGGCAAAACAGTGGCCATTAAGAAATCCAAGATAGTTGATGAAAGCCAAATTGAACAATTCATCAACGAAGTCATAATTCTGACCCAAATCAACCACCGAAATGTGGTGAAGCTGATGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTGGTGTATGAATTCGTGTCAAATGGGACTCTACACAGCCATATTCATGACAAGAACAGGTTTAATAATAATTCTCTGTCTTGGGAAGACCGGATGAGAATAGCGACAGAAACGTCAGGAGCTCTTGCGTACCTGCACTCGGCCGCGTCCACGCCCATCATTCACAGAGACGTGAAGTCGGCGAACATACTGTTGGACAAGAAATGCACTGCAAAAGTGGCCGATTTTGGAGCATCGAAGTTTATCCCGATGGATCAGTCGCAGATCACGACGCTGGTTCAGGGGACGTTCGGTTACTTAGACCCGGAGTATTTTCAAACGAGTCAGTTGACGGAGAAGAGCGATGTGTACAGCTTTGGGGTGGTACTGGTAGAGCTGTTGACGGGGGAGCTGCCGGTATCGTTCGAGAGATCGGAAACGGAGAGAAATCTGTCGTCGTATTTTGTAGCGTGTTTGCGGGAGAAGAGGTTGTTTAGGATACTGGATGGGAGAGTGCTGAGGGAGGGAAAGAGAGAGCAACTGATAGCAGCAGCAGAGCTAGCAAGGAGATGCTTGAAGCTAAAGGGTGAAGATAGGCCGAGGATGAGAGAAGTTGTGTCTGAGTTGGAACGGTTAACAATGAAAAGTGATGGCGTAAATGTAAATGAGACACAAACTTTGGTGGAAGTGGAACAATATTCGGATTTGTACCCCATTCAATACACTTCTACTTTTCAACCCTACGCATTTGATCACTCTCACGACTCTACTTCTTCCCATTCCCAAGAAGACGACGGATCCCGACTCTTACACTCCTTCCACCTCTCCAGATGA 2298 48.17 MYIQLHSIHYLLSTQSKMLHLLLLFIVLVSSCAAVDTKPGCPSNCGNVTVPYPFGIGFGCYMATGFDITCNSTYDPPLPFLGTSNLQVEEISEAKLRIRNFVSFKCYTPTGALTRSIASWINLGNLPLFFSTTNKFTAIGCDTMALITGSEGLSYTSGCVSLCSNKETVINGSCSGIGCCQTDVPRGLKRFQSAIGNLNNHTKTWQYNPCSYAFLVDQDRYTFRVSDLADPNFISTIQSVPVVLDWVVGSTTCEEARKGLSTYVCQANSECYDSESGSGYQCRCRRGFSGNPYLSSGCQDIDECAGPNNPCEGICVNTPGSYYCLCPHGSYGDGKKEGKGCINKTKQFPLIQLTLGLASTLLFVVVTATWLYFSIKKRNLIRLREKFFHQNGGFLLRQQLSQHDVAVDSTKIFTAEELEKATDNYAETRILGRGGNGTVYKGILPDGKTVAIKKSKIVDESQIEQFINEVIILTQINHRNVVKLMGCCLETEVPLLVYEFVSNGTLHSHIHDKNRFNNNSLSWEDRMRIATETSGALAYLHSAASTPIIHRDVKSANILLDKKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLVELLTGELPVSFERSETERNLSSYFVACLREKRLFRILDGRVLREGKREQLIAAAELARRCLKLKGEDRPRMREVVSELERLTMKSDGVNVNETQTLVEVEQYSDLYPIQYTSTFQPYAFDHSHDSTSSHSQEDDGSRLLHSFHLSR 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 125883 129027 - MELO3C017070.2.1 Cme07g00011 332027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00011 765 ProSiteProfiles EGF-like domain profile. 300 333 IPR000742 -
Cme07g00011 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 721 IPR045274 GO:0007166
Cme07g00011 765 ProSitePatterns Calcium-binding EGF-like domain signature. 300 324 IPR018097 GO:0005509
Cme07g00011 765 Gene3D Phosphorylase Kinase; domain 1 396 500 - -
Cme07g00011 765 Gene3D Laminin 303 343 - -
Cme07g00011 765 ProSitePatterns Protein kinases ATP-binding region signature. 431 454 IPR017441 GO:0005524
Cme07g00011 765 CDD STKc_IRAK 431 700 - -
Cme07g00011 765 Pfam Calcium-binding EGF domain 300 337 IPR001881 GO:0005509
Cme07g00011 765 SMART serkin_6 425 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00011 765 Pfam Protein kinase domain 425 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00011 765 Gene3D Laminin 248 302 - -
Cme07g00011 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Cme07g00011 765 ProSiteProfiles EGF-like domain profile. 249 299 IPR000742 -
Cme07g00011 765 SMART egfca_6 300 342 IPR001881 GO:0005509
Cme07g00011 765 MobiDBLite consensus disorder prediction 740 765 - -
Cme07g00011 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 26 721 - -
Cme07g00011 765 SUPERFAMILY Protein kinase-like (PK-like) 404 698 IPR011009 -
Cme07g00011 765 CDD EGF_CA 300 333 - -
Cme07g00011 765 ProSiteProfiles Protein kinase domain profile. 425 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00011 765 Pfam Wall-associated receptor kinase galacturonan-binding 41 95 IPR025287 GO:0030247
Cme07g00011 765 MobiDBLite consensus disorder prediction 744 759 - -
Cme07g00011 765 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 315 326 IPR000152 -
Cme07g00011 765 SMART egf_5 252 299 IPR000742 -
Cme07g00011 765 SMART egf_5 303 342 IPR000742 -
Cme07g00011 765 Gene3D Transferase(Phosphotransferase) domain 1 501 722 - -
Cme07g00011 765 Pfam Wall-associated kinase 172 285 IPR013695 GO:0004674|GO:0016021
Cme07g00011 765 SUPERFAMILY EGF/Laminin 298 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00456 Cme-Chr3:6494662 Cme07g00011 Cme-Chr7:125883 0 dispersed
Cme03g00459 Cme-Chr3:6529735 Cme07g00011 Cme-Chr7:125883 2.35E-141 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64987 PF00069 Pkinase 7.80E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00011 - - cmo:103493861 1538.47