Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00013 ATGGACGACCTCGGTGCCCAAGTCGTTCCTCCTATTTTCATCCACCAATCCTTGACCAGTCGCTACTCTGATCTCCCTTCCATCCCCAAGAAGCGTCCCTTATCCTATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCCTGGGATTGGGATAGCTCTAAATTTCTCACCAAACCCTCCAACCTAAACAACACCACTCCCGATGACCATGATGACACTCTTCGCCTTAATCTTGGTGGTCGTTACGTTGAGGATCCCGTCTCCAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGCCTCTGTCACCTACCCTATGTGCCAAGTCGATAATTGTAAGGAAGATCTCTCCAATGCCAAAGACTATCACCGCAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGTTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCACCCTCTTTCCGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGGCTTGCGGGGCACAACTGGCGTAGAAGGAAAACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGACCAGGAAGTAGAGGACCCCCAAGCACCGGAAATCTTGACATCGTCAGTCTATTAACTGTTCTAGCTAGGGCTCAAGGCAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCTAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCTGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAAGGGGAAGGCTCCTCCACAAAGTTCTCTGCAGCACCAAAACAAATTAAATGGTAATCCGTCTTCTCCTTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCGCATCAGCTCCGGATGCTCTTGCAATGCTATCACAGAAGAGCAGTGTCAGTAGTGATAGTGAAAAAACAAGGTCATCCTGCCCATCTGGTTCTGATCTTCAGAATAGGCCTCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCCGATGGCCAGGTTCAAGGAACCCGAGTTGGTTTGCCACTTCAGCTCTTTGGCTCTTCGCCTGAACATGATGCCCCACCGAACTTGACGGCTTCTAGAAAGTACTTCTCTTCGGATAGCAGCAATCCTATTGAAGAGAGATCTCCGTCATCTTCACCTCCTCTCCTGCAAACGTTGTTCCCCGTGCAAAGCACAGAAGAAACTACCAGTAATGGGAAAATGCCAATCAGAAAAGAAGTTAATGGTGTTGAGGTTCGAAAACCTCCTAGTAGCAATATTCCCTTTGAACTCTTCAGAGAGTTGGATGGAGCAAGACCAAATTCTTTTCAAACTATTCCTTACCAAGCTGGATACACTTCTTCCGGATCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAGCTTTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCGTCTGAGATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCGGTTTATATGTCCATGTCATCCATTGCATGGGAACAGTCTTGCACGTTCTTTGCCCAGCTTGAAGAAAATTTGGTTCTGCATCTTAAATCTTTGGTTCACAGTGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTACACTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCATCTGAACAAATCCTCAAAAGCATGGAGTAATCCGGAGTTAACATTGGTGTCACCTTTAGCAGTTGTGAGTGGACAAAAGACCTCGTTTTTATTAAGGGGAAGGAATTTGAAAATTCCTGGCACGAGAAGTGACATTTCACTATCCTGTAGGATTCATTGTACATCTATGGGAGGCTACATATCCGAAGAAGTAATGGGATTAAGTAGTCATGGAATATATGACGAGATACATTCTAGAAGTTTCAAAGTTGGAGATGTATCACCTACTACCCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTCCGAGGAAATAGTTTCCCTGTTATCATAGCTGATGCTACCATCTGTAGGGAATTGAGGCATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCTGATATCAGTTCAGAAAGTTCTTCATATGTTTCTTCGCAGCCAAGGCTAAGGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTGTTCCAAAGGGAAAGGTCCTCTTATGAGCTAGATAATCCAGATTTTTTAATAAGGCGGTTCAGATTTTTACTCACGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTGAAAACACTTCTTGACATTTTGGCCAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAAATGATATCTGAGATTCAGCTCTTAAACCGGTCAGTGAAAAGGAGGTGCAGGCGGATGGTTGACTTACTTGTTCATTATCACGTATCTGGCTTTGGTGATGCAGAGAAAAAATACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACTCCTCTGCATTTGGCAGCGTCAATGGCAGATGCAGATGATTTGGTTGATGCTCTAACAAATGACCCGCTAGAGAGGGCTCTAATCCTTGACCTCCTTGGAGATCAAGGATTGAGGCTTGGGGGATTTTCCCTGGATTTCCCTCCAAAGATTGGTTTGGAATGCTGGAGCTCCCAACTTGATGAAAGCGGACGGTCGCCACAGGCTTATGCTTTAATGAGGGGTAATCATACTTGTAATGAGCTGGTGAAGCGAAAACTTGGTGACAAGAAGAATGGTCAAGTTTCAGTTAGAATTGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGGGGGAGGGTGAAAGGTAGGTCCTGCTCCAGGTGTGCTGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACACACAGGTTGCTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCTGTTTGCGTTTGTGTGTGCCTATTTTTGCGAGGTTCCCCAGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTAGGCTACGGGACAATTTAG 3201 45.49 MDDLGAQVVPPIFIHQSLTSRYSDLPSIPKKRPLSYHQGQLHPHTWNPKAWDWDSSKFLTKPSNLNNTTPDDHDDTLRLNLGGRYVEDPVSKPPKKVRPGSPASVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVVKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLAASAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSSPPLLQTLFPVQSTEETTSNGKMPIRKEVNGVEVRKPPSSNIPFELFRELDGARPNSFQTIPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWEQSCTFFAQLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQLASHKDGKIHLNKSSKAWSNPELTLVSPLAVVSGQKTSFLLRGRNLKIPGTRSDISLSCRIHCTSMGGYISEEVMGLSSHGIYDEIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFDEFKVPDISSESSSYVSSQPRLRDEILQFLNELGWLFQRERSSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISEIQLLNRSVKRRCRRMVDLLVHYHVSGFGDAEKKYLFPPNFIGPGGITPLHLAASMADADDLVDALTNDPLERALILDLLGDQGLRLGGFSLDFPPKIGLECWSSQLDESGRSPQAYALMRGNHTCNELVKRKLGDKKNGQVSVRIGNEIEQLEVSSGERGRVKGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 129531 135641 - MELO3C017069.2.1 Cme07g00013 332029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00013 1066 MobiDBLite consensus disorder prediction 469 494 - -
Cme07g00013 1066 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 903 IPR044817 GO:0003677
Cme07g00013 1066 MobiDBLite consensus disorder prediction 314 417 - -
Cme07g00013 1066 MobiDBLite consensus disorder prediction 264 289 - -
Cme07g00013 1066 Gene3D - 101 171 IPR036893 GO:0003677|GO:0005634
Cme07g00013 1066 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 926 1066 IPR044817 GO:0003677
Cme07g00013 1066 MobiDBLite consensus disorder prediction 314 338 - -
Cme07g00013 1066 MobiDBLite consensus disorder prediction 267 289 - -
Cme07g00013 1066 MobiDBLite consensus disorder prediction 190 206 - -
Cme07g00013 1066 SUPERFAMILY SBT domain 108 188 IPR036893 GO:0003677|GO:0005634
Cme07g00013 1066 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
Cme07g00013 1066 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 38 903 - -
Cme07g00013 1066 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 926 1066 - -
Cme07g00013 1066 MobiDBLite consensus disorder prediction 391 417 - -
Cme07g00013 1066 Pfam SBP domain 110 183 IPR004333 GO:0003677
Cme07g00013 1066 MobiDBLite consensus disorder prediction 346 363 - -
Cme07g00013 1066 MobiDBLite consensus disorder prediction 176 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00013 - - - csv:101219733 1907.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01038 Cme-Chr4:14261325 Cme07g00013 Cme-Chr7:129531 1.53E-35 dispersed
Cme06g00038 Cme-Chr6:273415 Cme07g00013 Cme-Chr7:129531 1.72E-34 dispersed
Cme07g00013 Cme-Chr7:129531 Cme07g00585 Cme-Chr7:5040478 2.43E-34 dispersed
Cme07g00013 Cme-Chr7:129531 Cme11g02326 Cme-Chr11:30336669 1.01E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41583 PF03110 SBP 9.30E-29 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00013 Cme_Chr07 FPKM 5.827306 5.838158 17.865665 16.104856 12.190259 13.972265 14.488231 14.804954 15.465689 15.616642