Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00014 ATGCCTGACATGGATGTGCTCCCCGACAACGAGAAGTGTGCCTTGGATATGAGTACCTACGAGAATTTGTCTAATGTTTGCAATGCACCTCCTCTTCACTCTGCTACTCCCATTCCCAAGGATGATACCGATGGTTCTTACGTTTTCGTTACCTCCATCGATGCTGCTACTAACCATGATCACGCTGCTTCGGATCTTAATGCCCAACCAATGTGTTCTCATAACGTTGATGCCCAGATTCAGGTTCACAATCCTGATGAATTGAAGGATTCCCAATTCGACTTTTCTGAGCATATCAAAGAGAGTGACGAAATTCAGGATGAGATCAGTCTGGCGGATGTCCTTCATTCTTCTGACGCCAAGGTGGATGAACCGGAACCTGGACTCCCTTCTCAAACCGTGGAACAAACTCGAATCTTGGAGAACCAGACTATCGAGAAATCGTTTGATGCGGAGACAAATTCTGGCCAAATCCATGGGGTACACTCTCCTCAAGAAGTTGAAGACAATCAGATTCAGGAGGAAAATCAAAGAATTTCTACCTCTGGATCTTCTAACACCGATGATCGTAGTGGACAAATCGAGGTGGAGTCGTCCGAAATGGCGGAAGATATTCAAATTCATGAGGATAATGGAATTGTGGAAATCATAAAGTCTTCTGGCACCGAGACAAATCTTGTGGTAAACATTGAGGCGGAGTCTTCTTCGAAGGCAGACGGCATCCAGATTCTCAAGGATAATGGAACTGTTGCCATCAAGTTTTCCGATACTGAGTCGAACCCTGGGGAAGAGATTGACGTGTCTTCTCCGAAGGCACAGGACATTCAGAATCACGAGGAAAATGGCATAATGAAAGCCTTCGATTTATCTGATGCCGAGGCAAATCCTAGGTCAGATATTGAGGTGGAGTCTTCACGAGAGGTGGAAGACATTGAGCTTCAGGGGCAAAATGAAGTAGTGGATACCATAAAATCTTCTACTACTATGAAAAATCGTGGGCAAGAAGGTGAAGTAATTCCCGCGTGTAATGAAAGAGTGGCTATCATTGAATTGTCCAATGCCATACATGACAGCAGTGAAGAAGCTGAGATGGAACCTTTTGAGAGAGACGAAGGCATTCAAGAGCCAGAAGATGCAGATGTGGAGGCTGCTGACTGCCGTTGTGTTACTGGCAAAGAGAAGGTTGATGGGATGGTAAATAAAGCTGTGATAAGCGACCCTGTCGGAGGAATAGAAGAATCTCAAATTATAACTGACCCTGTAGGAGGAATAGAAGAATCTCAAATTATAACTATGGATGCTGCTAAATCTGACCTAGATCATTCTGATGACTCAATGGAAAATGTTAAGGAGGAATGTACATCAGGGGCTGCCTTGAATGACGAGAACTCTGAGATAACTCAATTTACAATTTGCCAGGATGGTGAACATTTGGAAGACATAAATTTGCCAGAAGAAAACAAAGCGGAGGTGGAGCAGCATTTGGAAGCAACTCCTAGTCCACTAGTCAGTTCAGAAGACATAAATGGTTCTATCTCAATTAGCTCGGAAGATGACTTGCCAACTAGTATGGATCAAGATGACCCCATGGGAACTATTGATGACAAAGATACTGTAGCCAACAGGACCAGCTTCCATGGCCACACTGAATCCTCGCCTGGCTCTGTAGAGTGTGATATTGCTACTGTTGAAACTCATGAATTATCTCCTACGGTGCTTATTAGTGATCCAATAGTAGAGATTACTGTAAATGAACAAGAGGTGAATCACGTGTTGGAACTAGAAGAGAACTCAGAAATGGTTTCTCATCCTAAAGTGGACAAATGTGTCAAGGTTGAAGTTTTGGAAGCTATGGTTTCTGGAAATGGAGATGATATGCCCACTGCACTCGGCAAATCTAAAATTTATTGTGGCGATGGCTCTGTTGCTGGCAGTCAATTGGTCGCTGAGGGCATTGGAACATTGGGAAGCATTGATACAGCAGTATCTGCTGTTGTGATAGGAAATACTTCAATTGAAATAAGGGAACCTGCCTCTGCTAATTGTCCTAATGGTCCATTAGTGAGATCCGATCTTGATGTTGAGGATTGTACAATTTCTGAAATTGGGGCTTCTGCGAGTGATGTTGTCCAACCGGATAAAGAAGTCAGTGAAAGTCATGAGGTTGGTTTTCTTGGTAACTCCAATTTTGATACTAAGTGTGAGGATGATCACGTGGAAAAAGATCACCTAGCACCTTTCCATTGTAACGATTGTACTTCAATTGAATGTGACGAGAAAGGTTCCACTGTTCCTGAAGTTCCTGATGGCGTCAATAAATCTTCTGCAATTCAATCAAGTTCTGCTGTTGCAACAGACACAGAATTGCATGATTACAAAAGCAGCTCAAGTCCAACTGCTAATGAGAAACCGGAAGATGACATCAAGATTCCATCCTCCATAGGAAGTGATAGCAGAAATGTACTCGGCAATGATTGCAGTGTGTCAAAAACTGAAATTCTCAAGGATTCTATAGTAAACAAAGAAGAGAATCTGCACTTAATGTCCGATGTTGTCTCTGAAACTGATGGTAAACCAACAACGGAAGAAATTGAGGTCAATCATGAGGGTTGCCAGAATGAACCGTCATCTATTTCTCCGGAAGGTTGTGGTGAAACTTTAACGGGTCAAAATGTAGGGGCTGAGGCAGGAACAAGGCCGTTTAACTTTTTGGTTAAGGTACCTCGATTTGATGACAAAAATATAAGAGAGCAGATTAAGTGTGCTCAGACAGAAGTTGATGGGAAGACCAAGGATCGAGATGCTATTCGGGTTCAAATACAGACAATGAGGGCTGCGTGGAAAGTGTTGAGTGATAATCTTGAAGCAGCTGTGACGGAAGGAAGAGCTGCAAGAGACTTGCTGAAGTCAAAAAGATTGGAGATAGACTCTGTTCAATCAGTGATAACAAAAGTGAAGAATGCTATGTCTGTTGAGGACATCGATGGCAGGATACGCAACATTGAACATATGATTGAGCATGAAACACTGCCACTGAAGGAGGAAAAGCAATTGATTCGTGAAATCAAGCAATTGAAGCAGGTCCGGGAACAGCTTTCATCAACTATGGGTAAGCAGGATGAGCTTCAACAGGCACTGGACCAGAAAGAGCATATTGAAGAGCGCCTTAAGCTATTAAGAAAGGAGATGGATTTACTGAGAGACAATGTTCTGAAAGCCGAATCAGTTATAAGGGCTGCCAAGAAGAAATATAATGACGAAAGCATAAAGCTGGATGAATTGCAATCCCAGTTTAAAGCAGCAGATAAGATTCGCCAAGAGGCATATGCTAATTTACAGAGTTTGAGGAAGCAATTATATGAGAAGAACAAATACTGCTGGAAGTATCGGGATGATGCAAAGGAAGCCAATGAAATAGCATCAAGTCGAGACATAGAGAGACTGCAAAATTTTTGCGTTAATCAGGTGGAGCGCATGATGGAACTGTGGAACACAAATGCTGAGTTCAGGGAAGAATATATTAAGAGTAACATGAGGAGTACCGTGAGGCGACTAAAGACGTTGGATGGCCGTTCCCTGGGTCCCAATGAAGAGCCGCATGTACTGAATCTTATTGTCAAGGAGGGGTCAGCAAGGGACAATTCTCTTTCAACAGTTTCAACAACCGAGGAATCTGAAAAACCGATGTCTGCTTATGATTCGAGAGATAACAAACCAGAGACCAAAGTAGCCGAAGCGAAGAACCAAATGACAAAAAAGACGAAGCCTATAACAGTTGTGGGCTTAGTGAATGCCCCTAGAAATATCTCTAGGGAAAATGAGGTAGAAGAACCACCTCGACTGGAGGAGATTAAGCGAACAAGAGAAGAAGAGGAGCTGGCAGCGAAAGTAGAAGAGTTGAGAAAGGAAGAGGAAGCAATGAAGTTGAAGGAGCAACGTAAGTTGGAAGAGAGGGCAAAAGCCAAAGAGGCGTTGGAGAGGAAAAAAAGAAATGCTGAGAAAGCCCAGGCCAGGGCAGTAATCAAAGCACGAAAAGAGGCAGAAGAGAGAGAAAAGCTAAGGGAGAAGAGAGCAAAAAAGAAGGAAAGGAAGATGGCAGCTGAGACAGAAGCTGGTAATGGTTGGGATGAAAGGGATTCTGCTTTAGTCACGGAGACCCCTTCAGAAGCTCAGAAGGAAGAGTCTGAAAACACAGGTAAACTGGGGATGGCAGCGAAGAGGCCTCAAAAAGCTTTGCAGTACACAAAACAGAGCAAGGCAAAGTCAATTCCTCCGCCACTTCGCATTCGGGGTAAGAAAAGGATGCAACCATGGATGTGGGTTCTTCTGACAACCATGGTTGTTTTTGCGCTGTTCTTCGTCGGACAACAACGGCTTCTCTACTAG 4386 43.46 MPDMDVLPDNEKCALDMSTYENLSNVCNAPPLHSATPIPKDDTDGSYVFVTSIDAATNHDHAASDLNAQPMCSHNVDAQIQVHNPDELKDSQFDFSEHIKESDEIQDEISLADVLHSSDAKVDEPEPGLPSQTVEQTRILENQTIEKSFDAETNSGQIHGVHSPQEVEDNQIQEENQRISTSGSSNTDDRSGQIEVESSEMAEDIQIHEDNGIVEIIKSSGTETNLVVNIEAESSSKADGIQILKDNGTVAIKFSDTESNPGEEIDVSSPKAQDIQNHEENGIMKAFDLSDAEANPRSDIEVESSREVEDIELQGQNEVVDTIKSSTTMKNRGQEGEVIPACNERVAIIELSNAIHDSSEEAEMEPFERDEGIQEPEDADVEAADCRCVTGKEKVDGMVNKAVISDPVGGIEESQIITDPVGGIEESQIITMDAAKSDLDHSDDSMENVKEECTSGAALNDENSEITQFTICQDGEHLEDINLPEENKAEVEQHLEATPSPLVSSEDINGSISISSEDDLPTSMDQDDPMGTIDDKDTVANRTSFHGHTESSPGSVECDIATVETHELSPTVLISDPIVEITVNEQEVNHVLELEENSEMVSHPKVDKCVKVEVLEAMVSGNGDDMPTALGKSKIYCGDGSVAGSQLVAEGIGTLGSIDTAVSAVVIGNTSIEIREPASANCPNGPLVRSDLDVEDCTISEIGASASDVVQPDKEVSESHEVGFLGNSNFDTKCEDDHVEKDHLAPFHCNDCTSIECDEKGSTVPEVPDGVNKSSAIQSSSAVATDTELHDYKSSSSPTANEKPEDDIKIPSSIGSDSRNVLGNDCSVSKTEILKDSIVNKEENLHLMSDVVSETDGKPTTEEIEVNHEGCQNEPSSISPEGCGETLTGQNVGAEAGTRPFNFLVKVPRFDDKNIREQIKCAQTEVDGKTKDRDAIRVQIQTMRAAWKVLSDNLEAAVTEGRAARDLLKSKRLEIDSVQSVITKVKNAMSVEDIDGRIRNIEHMIEHETLPLKEEKQLIREIKQLKQVREQLSSTMGKQDELQQALDQKEHIEERLKLLRKEMDLLRDNVLKAESVIRAAKKKYNDESIKLDELQSQFKAADKIRQEAYANLQSLRKQLYEKNKYCWKYRDDAKEANEIASSRDIERLQNFCVNQVERMMELWNTNAEFREEYIKSNMRSTVRRLKTLDGRSLGPNEEPHVLNLIVKEGSARDNSLSTVSTTEESEKPMSAYDSRDNKPETKVAEAKNQMTKKTKPITVVGLVNAPRNISRENEVEEPPRLEEIKRTREEEELAAKVEELRKEEEAMKLKEQRKLEERAKAKEALERKKRNAEKAQARAVIKARKEAEEREKLREKRAKKKERKMAAETEAGNGWDERDSALVTETPSEAQKEESENTGKLGMAAKRPQKALQYTKQSKAKSIPPPLRIRGKKRMQPWMWVLLTTMVVFALFFVGQQRLLY 1461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 137989 144537 - MELO3C017068.2.1 Cme07g00014 332030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00014 1461 Coils Coil 1015 1097 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 768 799 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 1212 1227 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 1212 1249 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 155 205 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 490 536 - -
Cme07g00014 1461 PANTHER CALPONIN-LIKE DOMAIN PROTEIN 233 1454 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 866 891 - -
Cme07g00014 1461 Coils Coil 1281 1370 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 174 192 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 1342 1428 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 498 520 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 761 816 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 870 891 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 1228 1249 - -
Cme07g00014 1461 Coils Coil 432 452 - -
Cme07g00014 1461 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 233 1454 - -
Cme07g00014 1461 MobiDBLite consensus disorder prediction 1342 1375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00014 - - - csv:101219495 2387.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00014 Cme-Chr7:137989 Cme11g02334 Cme-Chr11:30399143 1.49E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g25 Blo01g01657 . . . Bpe02g00286 . . . . . Cma01g02052 Cma09g00011 Car01g01616 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02435 Csa04g02749 . . . . . . . . . . . Cmo01g02107 Cmo09g00011 . . . . . Cpe02g00007 . . . . . . . . . . . . . . . . Chy07g00437 Cme07g00014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011484 0 2 2 0 2 0 2 0 0 1 0 1 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00014 Cme_Chr07 FPKM 3.927687 3.75775 6.301731 5.382553 8.081709 7.649772 8.849902 5.448718 4.983111 5.130443