Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00019 ATGGATTCTGATTACGGCATTCCTCGTCAACTCTCCGATCTTCAGAAGATCCGATCTCTCTACCAACCTGACCTTCCTCCTTGTCTTCAGGGAACAGCGGTCAGGGTTGAATTTGGGGATGCCACTACAGCTGTGGATCCTGCTGATGCCCCTACCATTTGTCGGGCCTTTCCCCACACTTACGGTCAGCCATTGGCTCACTTTCTCAGGGCGACTGCTAAAGTCCCAGATGCTCAAATTATTACTGAACATCCAGCCATCCGACTGGTAAATCGTGATAAGCTGTCATTTCTTTCAACAGGTGGTTCTGAAGGTTTATTTGCCCAGAAAACTCTTGAGATTACCGATGACATTCTTTCAACGTACAAAAATCAAGGTGGTTATGATTTATTGGGACGAACCAAGGATCAAATTCGAACTAAAGAGCAGGTTAATGCTGCACTGAAAACGTGCTTAGATTTGAAATTGGATGGTCTTGTCATAATTGGCGGAGTGACGTCAAACACTGATGCTGCTCAACTTGCTGAAACCTTTGCGGAAGCTAAATGCCCCACAAAGGTTGTAGGAGTTCCAGTTACTTTGAATGGCGATCTCAAGAACCAGTTCGTTGAAACAAATGTTGGTTTTGACACCATATGCAAGGTTAATTCTCAGCTAATCAGCAATGTATGCACTGATGCCCTGTCTGCAGAGAAGTATTACTATTTCATTCGACTCATGGGCCGGAAAGCATCCCATGTTGCTTTGGAGTGCACTCTTCAATCTCATCCAAATTTGGTTATCCTTGGTGAGGAGGTAGCTGCATCAAAACTTACTCTTTTTGATTTGACGACACAGATATGTGATGCTGTTCAGGCTAGAGCACAACAAGGTCTCGTAGAATTTATTGTTTCTAATCTCATATTTGACAAGTACCATGGGGTCATCTTACTGCCTGAAGGGCTGATTGAAAGTATTCCCGAAATCTATGCCCTTTTGAAGGAAATTCACAGTTTACTCAGGCAAGGAGTTCTCGTTGATAATATTTCTTCCCAACTCTCTCCTTGGGCATCAGCGCTATTTGAATTTCTGCCACCTTTCATCAGGAAGCAGTTGCTACTTCATCCTGAATCAGACGATTCTGCTCAGTTGTCTCAGATTGAGACGGAGAAACTTTTGGCACATCTTGTGGAGGCTGAAATTAACAAGCGTCTGAAAGAAGGGACTTATAAGGGGAAGAAATTCAATGCAATTTGCCACTTCTTTGGTTACCAGGCTCGGGGATCTTTACCTTCAAAATTTGATTGCGACTATGCCTTTGTTCTTGGCCATGTTTGCTACCATATCTTAGCTGCTGGTTTGAACGGTTACATGGCAACTTTAACTAACCTGAAAAATCCTGTGAACAAATGGCGCTGTGGTGCTGCTCCAATTGCAGTAGGTTTAACTACTTCGAAATATCATCAGATTTTTATCTCTTATTCATGCCATCTACGTCTGGTGAGTCATTTCATTGCTTATGATGAAACACAGGCCATGATGACTGTGAAGCGTTGGGCTCAAAATCCTGGAGCATCGTCCATTGGAAAACCAGCAATTCACCCAGCAACCGTGGATTTGAAAGGGAAAGCATACGAGCTATTGAGACAAAATGCGAGTCAGTTTCTGATGGACGATCTCTATAGAAACCCTGGACCTCTTCAGTTCGATGGTCCTGGTGCTGATGCCAAGCCCGTCTCCCTTTGCGTTGAGGACCAGGATTACATGGGCCGCATCAAGAAATTACAGGAATACCTTGATAAGGTCCGAACCATCGTGAAACCAGGGTGTTCGCAGGAGGTTCTTAAAGCAGCATTAAGTGTCATGGCATCAGTGACCGACTTTGGGTTTGTAATACGGAAGGAACTCTTATTTTGCATTCTCCTCTCCTGCGGCTTTGCAGTGTATCTCGTA 1932 44.1 MDSDYGIPRQLSDLQKIRSLYQPDLPPCLQGTAVRVEFGDATTAVDPADAPTICRAFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRLVNRDKLSFLSTGGSEGLFAQKTLEITDDILSTYKNQGGYDLLGRTKDQIRTKEQVNAALKTCLDLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNLVILGEEVAASKLTLFDLTTQICDAVQARAQQGLVEFIVSNLIFDKYHGVILLPEGLIESIPEIYALLKEIHSLLRQGVLVDNISSQLSPWASALFEFLPPFIRKQLLLHPESDDSAQLSQIETEKLLAHLVEAEINKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAFVLGHVCYHILAAGLNGYMATLTNLKNPVNKWRCGAAPIAVGLTTSKYHQIFISYSCHLRLVSHFIAYDETQAMMTVKRWAQNPGASSIGKPAIHPATVDLKGKAYELLRQNASQFLMDDLYRNPGPLQFDGPGADAKPVSLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDFGFVIRKELLFCILLSCGFAVYLV 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 171917 176877 + MELO3C017063.2.1 Cme07g00019 332035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00019 644 Gene3D Phosphofructokinase; domain 3 319 383 - -
Cme07g00019 644 Hamap Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 10 580 IPR011183 GO:0005524|GO:0006096|GO:0047334
Cme07g00019 644 SUPERFAMILY Phosphofructokinase 12 576 IPR035966 GO:0003872|GO:0006096
Cme07g00019 644 Gene3D Phosphofructokinase domain 209 423 IPR035966 GO:0003872|GO:0006096
Cme07g00019 644 Gene3D Phosphofructokinase domain 494 577 IPR035966 GO:0003872|GO:0006096
Cme07g00019 644 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 504 625 - -
Cme07g00019 644 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 1 89 - -
Cme07g00019 644 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 98 481 - -
Cme07g00019 644 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 504 625 - -
Cme07g00019 644 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 98 481 - -
Cme07g00019 644 Pfam Phosphofructokinase 100 441 IPR000023 GO:0003872|GO:0006096
Cme07g00019 644 Gene3D - 18 475 - -
Cme07g00019 644 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 1 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00019 K00895 pfp, PFP; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] - csv:101208728 1066.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02747 Cme-Chr1:34632266 Cme07g00019 Cme-Chr7:171917 1.98E-10 dispersed
Cme07g00019 Cme-Chr7:171917 Cme12g00899 Cme-Chr12:15831450 4.25E-108 dispersed
Cme07g00019 Cme-Chr7:171917 Cme04g01150 Cme-Chr4:15710705 2.21E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g33 . Blo12g00840 . Bda03g00336 Bpe02g00290 Bpe04g00295 Bma04g00304 Bma01g02424 . . Cma01g02045 Cma09g00016 Car01g01611 . . . . . . . . . . . . . . . . . . . . Cone17ag1482 Cone20ag0004 Lsi04g02427 Csa04g02743 . . . . . . . . . . . Cmo01g02102 Cmo09g00015 . . . Car09g00015 . Cpe02g00011 . . . . . . . Cla11g01857 . Cec11g1951 . . Cmu11g1892 . . . Chy07g00431 Cme07g00019
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003456 2 1 2 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 7 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00019 Cme_Chr07 FPKM 6.35307 6.161139 7.946417 8.727139 4.074658 3.75301 4.525764 11.373311 12.964068 16.63722