Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00024 ATGTCGGGATCTGAGACCGGAGTCATATCCAGCGGCGAACACTTCACCATCGGTCTTCAAAAGAATTCAGTACAGTCACAGCAGCCAGTCATGCAGAGCATGCATTTACCCTTCGGCGCAGATGGCGTCTATAAGCCCGTTACCGCGGCCTCTCCCACCTACCAATCCTCCAACGTCGGAGTTGCCGGTAATGCCGGTGCCGATGGATCTGCTCGTGAAGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGACCTCGAAAGTATGGGCCAGATGGCAGTATGTCAGTGGCTCCTGCAGTCCGCCCTGCCGCTGCAACTCAGTCCAGTGGAGGTTTTTCTCCGTCACCGACTGCCGCCCCTCAGTCAGGAGGATCAACTTCTCCAACTTCTTTGAAGAAACCCAGAGGCAGACCCCCTGGCTCCTCCACCAAAAAACATCAGTTGGATTCTTCGGAGTCAGGAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTTTCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATTCTTACAGCAAATGGTGCAATATCCAATGTGACGCTACGTCAGCCAGCCATGTCCGGTGGAACTGTGACTTACGAGGGGCGATTCGAGATTTTATCGTTATCTGGGTCCTATCTCCTCTCAGAGAATGGCGGCCAGCGGAGTCGAACTGGAGGGCTAAGTGTTTCCTTATCTGGACCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCATCTCCTGTACAGGTGGTCGTGGGGAGTTTCGTCACTGATGTGGGGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGCCGCCTGTTTCTGCACCCCATAAACTTGCTCCGATCCGTGCTGGAATGACGGGGGCCAGCAGCCCTCCATCGCGTGGGACTCTGAGTGAATCCTCAGGAGGGCCCGGGAGTCCATTTAATCAGAGTGCTGGAGCCTGCAACAATAACACCATACCTTGGAAGTGA 1056 52.46 MSGSETGVISSGEHFTIGLQKNSVQSQQPVMQSMHLPFGADGVYKPVTAASPTYQSSNVGVAGNAGADGSAREAFVNMNSQSEPVKRKRGRPRKYGPDGSMSVAPAVRPAAATQSSGGFSPSPTAAPQSGGSTSPTSLKKPRGRPPGSSTKKHQLDSSESGGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDVGHKELRQVNQIEQPPVSAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAGACNNNTIPWK 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 197832 201647 + MELO3C017058.2.1 Cme07g00024 332040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00024 351 MobiDBLite consensus disorder prediction 77 165 - -
Cme07g00024 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 290 - -
Cme07g00024 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Cme07g00024 351 MobiDBLite consensus disorder prediction 310 351 - -
Cme07g00024 351 Gene3D - 167 297 - -
Cme07g00024 351 CDD DUF296 166 280 IPR005175 -
Cme07g00024 351 ProSiteProfiles PPC domain profile profile. 161 301 IPR005175 -
Cme07g00024 351 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Cme07g00024 351 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Cme07g00024 351 MobiDBLite consensus disorder prediction 317 351 - -
Cme07g00024 351 MobiDBLite consensus disorder prediction 113 139 - -
Cme07g00024 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 15 345 - -
Cme07g00024 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 345 IPR039605 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01327 Cme07g00024 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01821 Cme-Chr5:27092163 Cme07g00024 Cme-Chr7:197832 3.15E-45 dispersed
Cme06g02478 Cme-Chr6:31751191 Cme07g00024 Cme-Chr7:197832 5.33E-62 dispersed
Cme07g00024 Cme-Chr7:197832 Cme11g02151 Cme-Chr11:28950150 4.98E-66 dispersed
Cme03g01327 Cme-Chr3:22821262 Cme07g00024 Cme-Chr7:197832 2.10E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00024 - - csv:101207513 631.713