Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00030 ATGGCTCTGTCTAAGTTACTGCCTCTAGCTATGTGCATGTCCCTTTTTGTCGTAACAAGTTTTGGGAAGGACTTTTCTATTGTGGGTTACTTGCCAGAGGACTTAACTTCAATGGATAAACTAATTGAGCTATTCGAAGAATGGATATCAAACCATGGAAAGATTTATGAGACTATCGAAGAAAAGTGGCACAGATTTGAGGTGTTTAAAGACAACTTGAAGCACATTGACGAAACAAACAAAAAAGTGAGTAGTTATTGGCTTGGACTTAATGAGTTTGCTGATTTGACCCACCAAGAGTTTAAAAATATGTACCTTGGTCTAAAAGTTGAGTCCTCTCGAACAAGGCAATCCCCAGAAGAGTTCACCTACAAGGATGTAGATTTGCCCAAGTCGGTGGATTGGAGAAAGAAAGGAGCTGTCACTCGTGTCAAGAACCAAGGGTCATGTGGTAGCTGCTGGGCATTTTCCACCGTTGCTGCAGTTGAGGGGATAAATAAGATTGTTGGTGGAAATTTGACTTCGTTATCAGAGCAGGAACTAATTGATTGCGATAGACCTTATAACAATGGATGCCATGGGGGCCTCATGGATTACGCATTTTCTTTTATTGTGTCTAGTGGTGGACTTCACAAGGAAGAAGACTACCCTTATCTTGAGGAGGAAAGCACTTGCGATAACAAAAAGGGGGAATTGGAGGTAGTGACAATCTCTGGCTATAAAGACGTACCGGAGAACAACGAGGCCAGCCTCATAAAGGCTTTGGCACACCAGCCAGTCAGCGTGGCCATAGAAGCTTCAGGAAGAGATTTCCAATTCTACAGCGGGGGCGTTTTTGATGGACCCTGTGGAACCCAGCTTGATCATGGAGTCACAGCCGTTGGATATGGATCGTCAAAGGGAGTGGACTACATCATTGTGAAGAACTCATGGGGACCCAAATGGGGGGAGAAAGGATACATAAGAATGAAGAGGAACACTGGGAAGCCTGCAGGGCTCTGTGGAATCAATAAAATGGCTTCCTATCCTACTAAATCTAAGTGA 1044 43.87 MALSKLLPLAMCMSLFVVTSFGKDFSIVGYLPEDLTSMDKLIELFEEWISNHGKIYETIEEKWHRFEVFKDNLKHIDETNKKVSSYWLGLNEFADLTHQEFKNMYLGLKVESSRTRQSPEEFTYKDVDLPKSVDWRKKGAVTRVKNQGSCGSCWAFSTVAAVEGINKIVGGNLTSLSEQELIDCDRPYNNGCHGGLMDYAFSFIVSSGGLHKEEDYPYLEEESTCDNKKGELEVVTISGYKDVPENNEASLIKALAHQPVSVAIEASGRDFQFYSGGVFDGPCGTQLDHGVTAVGYGSSKGVDYIIVKNSWGPKWGEKGYIRMKRNTGKPAGLCGINKMASYPTKSK 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 211090 212756 - MELO3C017053.2.1 Cme07g00030 332046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00030 347 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 287 297 IPR025660 -
Cme07g00030 347 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 22 345 - -
Cme07g00030 347 SUPERFAMILY Cysteine proteinases 40 344 IPR038765 -
Cme07g00030 347 Pfam Cathepsin propeptide inhibitor domain (I29) 45 101 IPR013201 -
Cme07g00030 347 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 147 158 IPR000169 -
Cme07g00030 347 SMART Inhibitor_I29_2 45 101 IPR013201 -
Cme07g00030 347 Gene3D Cysteine proteinases 24 346 - -
Cme07g00030 347 CDD Peptidase_C1A 130 343 IPR039417 -
Cme07g00030 347 PANTHER CYSTEINE PROTEASE XCP1-LIKE 22 345 - -
Cme07g00030 347 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Cme07g00030 347 Pfam Papain family cysteine protease 129 344 IPR000668 GO:0006508|GO:0008234
Cme07g00030 347 SMART pept_c1 129 344 IPR000668 GO:0006508|GO:0008234
Cme07g00030 347 PRINTS Papain cysteine protease (C1) family signature 147 162 IPR000668 GO:0006508|GO:0008234
Cme07g00030 347 PRINTS Papain cysteine protease (C1) family signature 289 299 IPR000668 GO:0006508|GO:0008234
Cme07g00030 347 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00030 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101205826 703.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01918 Cme-Chr1:27578318 Cme07g00030 Cme-Chr7:211090 0 dispersed
Cme07g00030 Cme-Chr7:211090 Cme08g00592 Cme-Chr8:3777236 1.38E-123 dispersed
Cme07g00030 Cme-Chr7:211090 Cme07g00326 Cme-Chr7:2071505 2.32E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g53 . . . . . . . . . . . . Car01g01605 . . . . . . . . . . . . . . . . . . Cone4ag2036 . . . Lsi04g01835 Csa04g02733 . . . . . . . . . . . Cmo01g02094 . . . . . . Cpe02g00017 Bhi09g02835 Tan01g5151 Cmetu07g1435 . Hepe01g2364 Mch11g0035 . Cla11g01846 Cam11g1913 Cec11g1938 Cco11g1951 Clacu11g2077 Cmu11g1882 Cre11g2290 . . . Cme07g00030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00030 Cme_Chr07 FPKM 26.223824 28.847303 19.972479 20.16247 16.19212 14.193273 14.728692 14.117597 13.514492 14.423146