Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00036 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAATTCCTCCGCCACCTCCGATACCTTCGAGCCTAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGCGCTTTGATTTGCGTCCTCGGTCTTGTTGCGGTTGCCCGCTGCGCCTGGCTACGACACCTTGCTGGTGATGGTGCTGGCGCTGGTTCCACTCGTCCTCCCCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTAAGGTCTCTTCCCAAGTACACTTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGTGTGCTGCCGCAGTGTGGCCATGGATTTCACGTGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGCCGTCAGATTCTGGTTGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCCAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG 558 55.56 MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGAGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 236448 237423 - MELO3C017047.2.1 Cme07g00036 332052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00036 185 Pfam Ring finger domain 101 144 IPR001841 -
Cme07g00036 185 MobiDBLite consensus disorder prediction 170 185 - -
Cme07g00036 185 SUPERFAMILY RING/U-box 83 150 - -
Cme07g00036 185 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Cme07g00036 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 178 - -
Cme07g00036 185 SMART ring_2 102 143 IPR001841 -
Cme07g00036 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 148 IPR013083 -
Cme07g00036 185 PANTHER RING-H2 FINGER PROTEIN ATL8 2 178 - -
Cme07g00036 185 MobiDBLite consensus disorder prediction 159 185 - -
Cme07g00036 185 CDD RING-H2_PA-TM-RING 101 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02782 Cme-Chr4:32934207 Cme07g00036 Cme-Chr7:236448 5.93E-30 dispersed
Cme06g02323 Cme-Chr6:30645942 Cme07g00036 Cme-Chr7:236448 2.16E-59 dispersed
Cme07g00036 Cme-Chr7:236448 Cme11g00075 Cme-Chr11:605991 6.56E-33 dispersed
Cme08g00039 Cme-Chr8:311577 Cme07g00036 Cme-Chr7:236448 6.42E-21 dispersed
Cme07g00036 Cme-Chr7:236448 Cme03g01021 Cme-Chr3:19340610 8.95E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00036 - - csv:101207021 368.237