Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00039 ATGGCCACTCACGCAGCTCTGGCTTCCACTAGAATCCCAACCAACACAAGGCTTCCTTCCAAGACTTCCTACTCTTTCCCCACTCGCTGCTCAGCCAAGAGGCTGGATGTGGCTGAGTTCAATGGGCTTAGATCTGCTTCCCTGAGCTTTCCCAACAATGGCAGAGAAGGATCTTTCTTTGATGTCGTGGCTGCTCAGCTTACCCCCAAGGTAGTAGGATCAACTCCTGTTAGAGGAGAAACAGTGGCTAAACTTAAGGTGGCAATCAATGGATTTGGACGTATCGGCAGAAACTTCCTGCGGTGCTGGCATGGCAGGAAAGATTCACCTCTTGACGTTGTTGTCGTCAATGACAGCGGTGGCGTCAAGAATGCCTCCCACTTGCTAAAGTATGATTCCATGCTGGGAACTTTCAAAGCAGAAGTGAAAATTGTAGACAATGAAACCATATCTGTTGATGGAAAGCCAATCAAGGTTGTCTCGAGCAGGGATCCCCTTAAGCTTCCTTGGGGAGAGCTTGGCATCGACATCGTTATTGAGGGTACAGGAGTGTTTGTGGATGGCCCAGGTGCAGGGAAACACATCCAAGCAGGTGCAAAGAAGGTTATCATCACTGCTCCTGCAAAAGGTGCTGATATTCCAACATATGTTGTTGGGGTGAATGAAAAAGATTACTACCATGATGTTGCTAACATCATTAGCAATGCCTCTTGCACCACCAATTGCCTCGCTCCATTTGTTAAGATCATCGACGAGGAATTCGGCATTGTGAAGGGAACCATGACAACAACTCACTCCTACACTGGAGACCAGAGACTTTTGGATGCATCGCACCGTGACTTGAGACGAGCCAGGGCTGCAGCTTTGAACATTGTCCCTACAAGCACTGGTGCAGCAAAGGCTGTGTCCCTTGTGTTGCCCCAGCTGAAGGGCAAACTCAATGGTATTGCACTTCGTGTGCCTACTCCAAATGTTTCAGTTGTTGATCTCGTTGTGAACATTGAGAAGAAAGGCATCTCCGCAGACGATGTCAATGCTGCTTTCAGAAAGGCAGCTGATGGACCGTTGAAGGGTGTTTTAGCTGTGTGTGACATCCCTCTTGTTTCTGTGGACTTCAAGTGTACTGATGTTTCCTCCACTATTGACTCGTCATTAACAATGGTAATGGGAGATGATATGCTCAAGGTTGTTGCCTGGTACGACAATGAATGGGGATACAGCCAAAGAGTTGTCGACTTGGCTCATTTGGTGGCAACCAAATGGCCGGGAGCGGGGTCGGGAAAAAGTGGAGATCCACTGGAGGACTTCTGCCAGACTAACCCAGCTGACGAAGAGTGCAAAAATACAAAATGGTCTAATTCTAGTTCCAATATGCGAATACTATCACCATTCTCTGAGAGCTGCAAAATGGCCGTCGACAAGTCTACAGCCAAGGGAGAATCTCGTGGGAATGCCTGA 1458 48.15 MATHAALASTRIPTNTRLPSKTSYSFPTRCSAKRLDVAEFNGLRSASLSFPNNGREGSFFDVVAAQLTPKVVGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSSRDPLKLPWGELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYYHDVANIISNASCTTNCLAPFVKIIDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKKGISADDVNAAFRKAADGPLKGVLAVCDIPLVSVDFKCTDVSSTIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLAHLVATKWPGAGSGKSGDPLEDFCQTNPADEECKNTKWSNSSSNMRILSPFSESCKMAVDKSTAKGESRGNA 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 246226 250588 + MELO3C017044.2.1 Cme07g00039 332055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00039 485 SMART gp_dh_n_7 85 238 IPR020828 GO:0051287
Cme07g00039 485 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 86 412 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cme07g00039 485 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 86 187 IPR020828 GO:0051287
Cme07g00039 485 Gene3D Dihydrodipicolinate Reductase; domain 2 237 402 - -
Cme07g00039 485 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 250 IPR020831 GO:0016620
Cme07g00039 485 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 194 207 IPR020831 GO:0016620
Cme07g00039 485 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 315 332 IPR020831 GO:0016620
Cme07g00039 485 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 356 371 IPR020831 GO:0016620
Cme07g00039 485 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 259 275 IPR020831 GO:0016620
Cme07g00039 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 254 IPR036291 -
Cme07g00039 485 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 1 448 IPR020831 GO:0016620
Cme07g00039 485 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC 1 448 - -
Cme07g00039 485 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 401 - -
Cme07g00039 485 Gene3D - 86 414 - -
Cme07g00039 485 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 236 243 IPR020830 GO:0016620
Cme07g00039 485 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 243 400 IPR020829 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00039 K05298 GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] - csv:101205112 850.892
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01975 Cme-Chr6:24030646 Cme07g00039 Cme-Chr7:246226 0 dispersed
Cme07g00039 Cme-Chr7:246226 Cme12g01611 Cme-Chr12:23338297 1.51E-100 dispersed
Cme07g00039 Cme-Chr7:246226 Cme11g01634 Cme-Chr11:24221845 2.26E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g68 Blo01g01643 . . . Bpe02g00301 . . Bma01g02416 . . Cma01g02029 Cma09g00036 Car01g01596 . . Cpe06g00010 . . . . . . . . . . . . . . . . . Cone17ag1465 Cone20ag0011 Lsi04g01828 Csa04g02722 . . . . Bda11g00981 . . . . . Sed01g2415 Cmo01g02084 Cmo09g00037 . . . Car09g00031 . . Bhi09g02843 Tan01g5131 Cmetu07g0789 . Hepe01g2355 Mch11g0042 . Cla11g01837 Cam11g1904 Cec11g1931 Cco11g1940 Clacu11g2068 Cmu11g1874 Cre11g2282 . . Chy07g00409 Cme07g00039
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007528 1 1 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00039 Cme_Chr07 FPKM 90.915848 95.013657 66.691887 72.433502 82.518944 81.878662 78.736588 91.365456 89.539963 91.415146