Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00040 ATGAGTTTCCTTTGGTTTGTTTCATTGTTATCTCTCGTTTGTGGTACTTTTCCTCTTGGATTTGGTAAGAACATTTCGTCAAGACCATCGGTTGTGAATATTGGTGCTATTTTATCTTATAATTCTACTATTGGAAAAGTTGCCACTATAGCCATTAAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCCGGAACCAACCTTTGGTTACAAACGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTTGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAGTCTTCTGTTGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTCCCTCTGGTCTCCTTTTCAGCTACTGATCCTACCCTCTCTGCCCTTCAGTTTCCTTTCTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCGGTTGCTGAGATTGTTGAATTCTATAAGTGGAAAGAGGTTATTGCTATTTATGTTGATGATGATTATGGGTGGAACGGAATTGCAACACTGGGTGATAAACTTGCCGAAAGGCATTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCAAGTTATGGATCAGCTTGTTAAAGTTGCTCTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCACCTTAGTATTTTCAGTTGCTAAGTACCTTCAAATGATGGGCAATGGATATGTATGGATAGCGACTGATTGGCTTACGTCTCTATTAGACAGTGTTGTTCCTCTCCCTTCTGAAAAAATGGAGTCGATGCAAGGAGTTATTTCTCTACGGCAGCACACAAGAGAATCTGATAAAAAGAGAGCTTTTCTTTCACGGTGGAATAAGTTAACAGGTGGGTCTTTAGGTCTCAATACTTATGGTCTGTATGCTTATGACTCTGTTTGGATGGTTGCTCATGCCATCGACAAATTTTTCAGTCAAGGTGGGGTCGTCACACACTCTAATGACTCCAAGTTGCATTTCAGTGAAAGTGGTGATCTTCATCTTGAAGCTATGACAATCTTTGATGGTGGAAACCGCCTACTGAATAACATATTGGAGAGTGATTTTGTTGGTCTGACTGGTGCCATTAAGTTCGATTTGGACAGATCTCTTATTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGGAGAGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGCTCCGGAGATACTCTATTCCAAACCACCCAATCGTTCACACGCAAATCAGAAGTTGTACGAGGTGATATGGCCAGGAAATACAATTGAAAAGCCTCGAGGATGGGTATTCCCAAACAATGGAAAGCTATTAAAAATTGGTGTGCCACTTCGGGTCAGTTACAAGGAATTTGTGTCAAAAATTAAGGGGACAGAAAATTTCCAAGGTTTCTGCATTGATGTGTTTACGGCTGCTGTAAACTTATTGCCGTATGCTGTTCCGCACGAATTTATAGCCTTCGGCGATGGCCATCACAATCCAAATTACACAGATCTAGTGTATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGATATAGCCATTGTCACAAGCCGTACAAGGCTTGTAGATTTTACTCTGCCGTATACTGCTTCTGGACTAGTTGTTGTGGCTCCATTCAAAAAACGGAATACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCCGCCATGTGGATGGTCACAGCTAAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTAATCATATGGCTCTTTGTGGTTCTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTTTCCAATCACTGGAATTGAAACCTTGAGGGAAGGTGACGAACCAATAGGTTTCCAAGTTGGATCATTTGCTGAACGCTATCTGAGAGAGGAGCTGAACATATCTAAATCTAGGCTTATTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTCCTCTCGAGACAGTGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCACGAGATTCTCCCTTGGCTGTAGACTTGTCGACGGCCATTTTGCAGCTCTCAGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCTTGCACCATGGAAAATGCAGAGCTAGAATCAGATCGACTTCAACTTAAGAGCTTCTGGGGTCTTTTTCTAATATGTGGGATAGTTTGCTTCATTGCCCTTGCCATATATTGCTTTCAGATAATTCGTCAGTTATACCATACTGAACCGGAAGAACCCGATCTATCTAGCAATAGTGGATCACATTCTAACCGCCTTCGACGAATTATATCACTATTGGATGAGAAGAAAGAATCTTCTAAAAGGGGAAGCAAACGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGAACAATGATCATTTGGGGGTAGATCCTTGA 2625 42.02 MSFLWFVSLLSLVCGTFPLGFGKNISSRPSVVNIGAILSYNSTIGKVATIAIKEAVKDVNADPSILPGTNLWLQTQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEFYKWKEVIAIYVDDDYGWNGIATLGDKLAERHCKITYKVGISPDSVDNRAQVMDQLVKVALMESRVMVLHVNPKLGTLVFSVAKYLQMMGNGYVWIATDWLTSLLDSVVPLPSEKMESMQGVISLRQHTRESDKKRAFLSRWNKLTGGSLGLNTYGLYAYDSVWMVAHAIDKFFSQGGVVTHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDLDRSLIHPAYDIINVIGTGSRRVGYWSNYSGLSIDAPEILYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHEFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKRNTGAWAFLHPFSPAMWMVTAKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYFPITGIETLREGDEPIGFQVGSFAERYLREELNISKSRLIPLGSPEEYAKALELGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAVDLSTAILQLSENGDLQRIHDKWLVKSACTMENAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYHTEPEEPDLSSNSGSHSNRLRRIISLLDEKKESSKRGSKRRKVEKSSENDKNNDHLGVDP 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 249588 254980 - MELO3C017043.2.1 Cme07g00040 332056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00040 874 Pfam Bacterial extracellular solute-binding proteins, family 3 486 766 IPR001638 -
Cme07g00040 874 SMART GluR_14 469 767 IPR001320 GO:0015276|GO:0016020
Cme07g00040 874 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Cme07g00040 874 Gene3D - 50 396 - -
Cme07g00040 874 SUPERFAMILY Periplasmic binding protein-like II 446 767 - -
Cme07g00040 874 PIRSF IGluLR_plant 1 596 IPR017103 -
Cme07g00040 874 PIRSF IGluLR_plant 594 872 IPR017103 -
Cme07g00040 874 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Cme07g00040 874 Gene3D - 147 421 - -
Cme07g00040 874 MobiDBLite consensus disorder prediction 840 874 - -
Cme07g00040 874 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 596 873 - -
Cme07g00040 874 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 595 - -
Cme07g00040 874 Gene3D - 599 651 - -
Cme07g00040 874 Gene3D - 694 730 - -
Cme07g00040 874 Pfam Receptor family ligand binding region 51 406 IPR001828 -
Cme07g00040 874 CDD GluR_Plant 466 765 - -
Cme07g00040 874 Pfam Ligand-gated ion channel 767 797 IPR001320 GO:0015276|GO:0016020
Cme07g00040 874 PANTHER GLUTAMATE RECEPTOR 3.3 596 873 - -
Cme07g00040 874 PANTHER GLUTAMATE RECEPTOR 3.3 12 595 - -
Cme07g00040 874 Gene3D - 731 764 - -
Cme07g00040 874 Gene3D - 432 598 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00040 Cme-Chr7:249588 Cme08g00998 Cme-Chr8:6507879 0 dispersed
Cme07g00040 Cme-Chr7:249588 Cme11g00787 Cme-Chr11:10028159 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00040 K05387 - csv:101204862 1642.09