Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00041 ATGGCTACGGGTATAGATTTTTCACCTCCCTTCACACTACTGGAAGGCGGCGGATACAGTAAGGACAATGTATCAGCCACAGATGACGAAAATTCTGATAGCTTTAATAGTTTGAAACAGATGAGCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGACATAGTGTGGGCTCCTTAAAGCTCCTTGGCCAAACTGATTTAAGCTTGGATGCGGAAACTCTTGGGAATAGGTCACCTGATGGAAAAGCAGGATTCTTACCTGTCTTTAGGTCAGGTAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATCGATGATCTTGTTGAACATATCCATGCTTGTGAAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGTACAGACGCCGCTGCTTTTGTTAGAAAAAACATCCTCAGATTCATAATCGAAGACTCCTGTTTCCCAATTAGCGTAGAGAAGGCAATTAAGAGTGCTTTTCTGAAAGCTGACTACGCATTTGCTGATGCTAGTTCTCTGGATATCTCCTCCGGCACAACTGCCCTAACTGCTTTAATTTCTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGAGCTGTTCTGGGGAGAAGGGGAAAAGCCATTGAGGTGTCAAAGGATCACAAGCCCAACTGTGCATCTGAAAAGCTTAGAATTGAGAAGCTGGGTGGGGTGATCTATGATGGATACCTGAATGGGCAGTTATCTGTTGCACGTGCAATAGGAGATTGGCACATGAAAGGTGCCAAGGGTTCTGCCTGCCCTCTGAGTGCAGAGCCGGAGCTGCAGGAACTGAACTTGACGGAGGAAGATGAATTTCTAATAATGGGATGCGATGGGCTTTGGGATGTGATGAGCAGTCAGTATGCCGTTACAATGGCGAGGAAAGAGCTGATGCTACATAATGATCCAGAGAGGTGTTCAAGAGAGCTGGTACGGGAGGCACTAAAGCGAAATACATGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCGGCTGACCCACCCCCTCGGATAGAAATTCCTCCGACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTACTGGACTGCAATTCTTGA 1161 45.99 MATGIDFSPPFTLLEGGGYSKDNVSATDDENSDSFNSLKQMSSGKPPRHLSVMRHSVGSLKLLGQTDLSLDAETLGNRSPDGKAGFLPVFRSGSCSERGPKQYMEDEHICIDDLVEHIHACEDFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIIEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTALISGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 257040 261095 + MELO3C017042.2.1 Cme07g00041 332057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00041 386 MobiDBLite consensus disorder prediction 18 49 - -
Cme07g00041 386 SMART PP2C_SIG_2 106 351 IPR001932 -
Cme07g00041 386 SMART PP2C_4 81 349 IPR001932 -
Cme07g00041 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Cme07g00041 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Cme07g00041 386 CDD PP2Cc 90 351 IPR001932 -
Cme07g00041 386 MobiDBLite consensus disorder prediction 29 44 - -
Cme07g00041 386 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Cme07g00041 386 Gene3D - 79 354 IPR036457 -
Cme07g00041 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Cme07g00041 386 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 373 - -
Cme07g00041 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01846 Cme-Chr5:27268241 Cme07g00041 Cme-Chr7:257040 1.22E-107 dispersed
Cme07g00041 Cme-Chr7:257040 Cme11g02106 Cme-Chr11:28685305 9.80E-99 dispersed
Cme07g00041 Cme-Chr7:257040 Cme01g02548 Cme-Chr1:33435260 1.93E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00041 K14803 - csv:101205355 763.066