Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00047 ATGGTATATGCAAAAGGGGGGACGAACCCCAAATCCAAGACCAATCCAACTTATCAGCTCACGAAGAATGTGTACCCGATTGGTGGCATCCAAGTGGAATTTCCATACCGACCATACGGTTCGCAGCTGGCGTTCATGGGCAGAGTTATATCCACCCTTGATCGAGCTCAGCGAGAGGGCCATTGCCACGCATTACTGGAATCTCCGACTGGAACCGGGAAGTCGCTTTCACTTCTCTGCTCGAGTCTTGCTTGGCAGAAGAATTACAAGATAAAGAATCAGGATGCTAATTCCAGTCACACGAAGCCTGCTCCAGAGGCTGCCACAGATCCTCTCGGTTTTGGCGGTGGATTTATTCCCGAAGTGCAGACGTCAAATACTGAGTCATCTCTTCCAGGGCCAAACAACAAAAGTCAGAAGAAAAAAACAGCCCCGACCATATACTACGCCTCGAGAACACATTCACAGATATCACAGGTGATCCGTGAGTATAGAAAAACTTCCTATCGAGTGCCAATGGCAGTGTTGGCGTCAAGGAAACATCTATGCACAAATCCTTATGTACGAGGGAAAGATAATTTAGATGAAGAATGCAAACTACTTTTGAAGGATCAAGATGCAGGATGCAGCGAATTTAAAAACGCAAACAAGGTTAAATGTCATCCAACTCTTCAGAAAGGAGGATGTCACGAGGTTCATGACATTGAAGATTTGGTGAAAGTTGGAGAAGCTGTAAAAGGTTGTTCATATTATGCAGCTCGCTCTATGGCAGACGACGCACAGCTGGTTTTTTGCCCATATAGCTATATTATCAATCCAGTTATTCGAGGAGCAATGGATGTAGACATTAAGGGTGCAATTGTGATTTTTGATGAAGCCCACAATATAGAGGATATTGCACGTCATGGTGGTAGTGTGGATATTGAAGAGGATACTTTAAATAAATTGCAGATGGAGTTAGAGCAACTATGTCCTTTTAATTCTTTGGTTTACCAGCCTCTGTATGAAATGACACAGGATCTCACAAGTTGGATTGACCAAAGGAAGACCACATTGCAGAAGCGCGAGTTTCAGCATTATGTCACCTGCTGGACTGGCAATCATGCTCAAAGGGAGCTCCAAGAAGCTAATATAACTCAACAATGCTTTCCCATTTTGCTTGAATGTGCAACAAAGGCTATTAAAGCAGCTTCAGATACTGAGTCAGATGATGCACATTTGAGTGGCCTGTCAGTGATAACCCTGGAAGGATTATTCTCTTCACTGACATATTTCTTCTCAAGAAATGGTTGCCACATGTCTGACTACCAGCTTGCATTACAACGCTACATTAAAAGAGATCCTGGAAAAGCTTATGCTGAATGGACGGTTACTTTAAGTTTGTGGTGCTTTAATCCAGCTGTTGTATTTAGAGACATTGGTGATCTTTCCTTGTCGGTTATTTTGACATCTGGGACCCTGTCACCTATGAATTCCTTTTCATCTGAACTAGGAGTTCAGTTTGGAACTTCACTGGAAGCTCCTCACGTGATTGATGTGGAATCTCAGGTGTGGCCAGCTATTATATCAACTGGTCCAGAAAACTATCCGCTGAATGGAAGTTATAAAACAGCTGATGGATATGCATTCCAGGATGCTCTAGGAAAATCATTGGAGGAGATATTTTTTATTGCTCCTGGTGGGTGTCTTGTGTTCTTCCCCAGTTATAAGCTGATGGAAAAACTCCAAAAACGTTGGTCTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCTCTTTTTGTAGAGCCAAGAGGAGGAGCTCAAGAGGATTTTGATTCCATATTGAAAGGTTATTATGATACTATACGTCTTGGTGATAACTTTGCAGTCGGGAAGAAGAGTCGAGGTAAGAAGGTCAAACCCAATCACTCGTATGTCGTTGGCTGTGAAAATTCCAAGGAAGGAGCAGCACTCCTTGCAGTTTTTCGAGGAAAGGTTTCAGAAGGAATAGACTTTTCTGATGATAATGCTAGAGTGGTTATAATAGTTGGTATTCCATTTCCAAATATAAATGATATTCAAGTTGCATTGAAGAAAAAGTTCAATGACACATATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAGGCCTTCCGAGCTCTAAATCAAGCTGCAGGACGTTGTATTCGACACAGATTTGACTATGGTGCCATTGTGCTATTAGATGAGCGTTTCCAGGAAGAGAGGAACAGGACTTACATTTCAAAGTGGCTAAGAAAATCCATTAAACAATTTGATAATTTTGAACAGTCTATGGAGGAGCTGAAATCCTTTTTCAGCCATATTAAGGAGCGCATTAGCAACAATACAGAAAGCGAGTTACCAAATTCTGAGAATGAGGAGCATATTATTTCTACCTTCCCAAGTAGTTGTAGAAGAACGAAGATGGAGAAAATTGACAAGTTTAATCATCATGGGCAGAAAGCTCATGAAGATGCAAAAAACTGTATAATTGATCTGGAGTGCAGTGTTGAAACAGAAACAAGGAACCATGAGTTTCTATCTATGAATACCGTCCTTGAAGTTCCAGATTCCCCAATTGTTCAGGAGACTCCTTGTGTTGATATTGTTGGCGTCACTAGTCCAGGAGAATCCAAAGATGAAAGATCAACTTCAACTGTAATTGAGGCATATTCTGAGCTTTCTGATCAATTATCATATCATTCAAAACCTCTGGTCAAATCAACAAGATCTCCTCTTACATCTGAAACTTCAATTCTGCATACTCCTGAAAGAAATGTTTCTGTGAATGCCTACAGCTTTGCACGAGATACAGAATCTTCTTTGAATACGAGTGTAAATTCTCATACCCAGAAAAGGAGGAAGTCTATCGGTATAACTATTACGAAACTTGCTCAAGAAGAGTTTCTTACCGATCCCAGAACCAAAAATCCCGAATATAACAGTGTGGACAGAAGCTCAATAATTAGCAGAAATTTAACTAGTCCAAAAGATACTAATTATGAAACTCTTCTCACGGAAAAGAAGTCTAACAGTTTAAATGTCACACGAGTGCCCAAGCTAAATGATACTGTTCCTGTTTGTCTGTCGTCTGGTCTTCCAATGGACAAAAAGTTGTATCTGTCTTGTGCACTTTGTAGAAGCCCACTTGGTCGCCCAGAGAACCATTTAAACATAACGTGCTCATTTACTGTATCATCAAAAACACACTTAGTATCGATATATAAGGAAAGGTTTAAAGCTCAAACTGCCAATTCATCAGCAAGTGTACAGCTTATCATTACAGACATTTTGTTTGTTAACCAGAGGCTCCTAGTTAGGTCTTCGAAAAATTCAGGACGTGGTATATGGAGTGAGGAGGACGGCTGTGTATATAATTATGTCTTTTGCCCCTTCTGTTGCAGTGACAATTGCATTGGTGTACAGATCATGGCAACTGATGCATCAAATATTCCATTACTTAATAAAGTGATGTTTTACGTTGAGTGTTTGGAGATCCAGGACCTTAAAGCTGATACAGGAAAGGCTTTAGTAAACAAGGAAGTATCACCCGTTGGTAGCTCAGCTAAGAATAAGTATGCCATCATGGAACCCATTGAAAATTTTTCATACTCCCCTAGCCCGCTAACCTCAGGCGGCTGGAGGTCTACTAAATTGAAAGTCAGAAGGAAAGGAACTTCATGA 3705 40.81 MVYAKGGTNPKSKTNPTYQLTKNVYPIGGIQVEFPYRPYGSQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQKNYKIKNQDANSSHTKPAPEAATDPLGFGGGFIPEVQTSNTESSLPGPNNKSQKKKTAPTIYYASRTHSQISQVIREYRKTSYRVPMAVLASRKHLCTNPYVRGKDNLDEECKLLLKDQDAGCSEFKNANKVKCHPTLQKGGCHEVHDIEDLVKVGEAVKGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMDVDIKGAIVIFDEAHNIEDIARHGGSVDIEEDTLNKLQMELEQLCPFNSLVYQPLYEMTQDLTSWIDQRKTTLQKREFQHYVTCWTGNHAQRELQEANITQQCFPILLECATKAIKAASDTESDDAHLSGLSVITLEGLFSSLTYFFSRNGCHMSDYQLALQRYIKRDPGKAYAEWTVTLSLWCFNPAVVFRDIGDLSLSVILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVESQVWPAIISTGPENYPLNGSYKTADGYAFQDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLQKRWSETGQWSRLNARKSLFVEPRGGAQEDFDSILKGYYDTIRLGDNFAVGKKSRGKKVKPNHSYVVGCENSKEGAALLAVFRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKFNDTYKMSKNLLSGNEWYCQQAFRALNQAAGRCIRHRFDYGAIVLLDERFQEERNRTYISKWLRKSIKQFDNFEQSMEELKSFFSHIKERISNNTESELPNSENEEHIISTFPSSCRRTKMEKIDKFNHHGQKAHEDAKNCIIDLECSVETETRNHEFLSMNTVLEVPDSPIVQETPCVDIVGVTSPGESKDERSTSTVIEAYSELSDQLSYHSKPLVKSTRSPLTSETSILHTPERNVSVNAYSFARDTESSLNTSVNSHTQKRRKSIGITITKLAQEEFLTDPRTKNPEYNSVDRSSIISRNLTSPKDTNYETLLTEKKSNSLNVTRVPKLNDTVPVCLSSGLPMDKKLYLSCALCRSPLGRPENHLNITCSFTVSSKTHLVSIYKERFKAQTANSSASVQLIITDILFVNQRLLVRSSKNSGRGIWSEEDGCVYNYVFCPFCCSDNCIGVQIMATDASNIPLLNKVMFYVECLEIQDLKADTGKALVNKEVSPVGSSAKNKYAIMEPIENFSYSPSPLTSGGWRSTKLKVRRKGTS 1234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 295461 304656 + MELO3C017033.2.1 Cme07g00047 332063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00047 1234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 741 IPR027417 -
Cme07g00047 1234 Gene3D - 528 777 IPR027417 -
Cme07g00047 1234 Pfam Helicase C-terminal domain 553 760 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cme07g00047 1234 Gene3D - 36 349 IPR027417 -
Cme07g00047 1234 PANTHER FANCONI ANEMIA GROUP J PROTEIN 19 1095 - -
Cme07g00047 1234 SMART Cxpdneu3 569 747 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cme07g00047 1234 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 19 1095 IPR045028 -
Cme07g00047 1234 CDD SF2_C_XPD 515 745 - -
Cme07g00047 1234 Pfam DEAD_2 149 313 IPR010614 GO:0003677|GO:0003678|GO:0005524
Cme07g00047 1234 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 28 341 IPR014013 GO:0005524
Cme07g00047 1234 SMART deadxpd 30 328 IPR006554 GO:0003678|GO:0016818
Cme07g00047 1234 MobiDBLite consensus disorder prediction 123 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00047 K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein [EC:5.6.2.3] - csv:101217839 2365.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02677 Cme-Chr1:34224381 Cme07g00047 Cme-Chr7:295461 8.44E-105 dispersed
Cme07g00046 Cme-Chr7:286212 Cme07g00047 Cme-Chr7:295461 6.93E-108 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00047 Cme_Chr07 FPKM 5.056103 5.621424 2.125757 1.845074 0.0 0.0 0.074739 5.687837 5.513716 7.006469